Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01835 ATGGATAAAGTCGAGTTGAGCGGTGTGTACGACGAAGCCATGGATTTGGACTTGGACTTGGACTTGGACTTGGACCTGGACTTGGTCTTGGATGAAGATGATCGGACAAAGAGGAAGAAAATCAAGAATCAGACAGTGGACATGGAGATGAAACATATTCACCACGCCGACGAAGATGGATCACACAAGCTTTTCCCGAAACAGGCGCTTAGTGTTCTGCTTGTTGAAGCTGATGATTCTACTCGCCGGATCATCGCCGCGCTTCTTCGTAAATGCAGTTACAGAGTCTATGCTGTTCCTGATGGACTGAAGGCATGGGAATGTTTGAAGGGAAGACCGCATAATGTTGATCTCATACTTACTGAAGTGGATTTGCCATCAATATCTGGTTATGCACTACTAACGTTAGTCATGGAGCACGACATTTGCAAAAATATTCCTGTTATAATGATGTCATCTTGCGACGCAGTTAGCATGGTCTTGAAGTGTATGTTAAAAGGTGCGGCTGATTTTCTTATTAAGCCAATTAGAAAAAATGAGCTCAAGAACCTTTGGCAGCATGTTTGGAGAAGGCACACGAAGATTAGTGGGAAATTCCCCTCCTATTTAACTGTTGGACAGCGTGAAGTTGTGGCCACTTCTGATAATGATGAAGGTAGCAATTATTCAAGTTACTGTGTGGCTTCTAGAAAGAAAATTAAGGAATGCAGTGAGAAGGGAAGTGATGCCCAGAGCTCTTGTACAACACCTTACTTGGAAGCTGAGAATAGATGCATGCCAAATATGCAGGGACTGTCACCACTGAAGGATGGGACTGCTCCAAAGCTAAATATGAGTTGTAAGAAACGTGGATTTGGTGCTTATATGGACAAAGAATTTGATATACTTAAAACCAACATCAGAGATAAGTCGGATAATGCGGCCAAAAGCGAAGCTTGCAATTCAGTTCCTTCAAGAATGAAAGAAGATTGTGTTATCGCAGAAATAAGAAGCCAGAATAAAGTTTTGAGGCCTGACTTTTACAAGGTCGTCGATGATGGTGCTTCTGAGATGTTTAGTTACAACAATAAGGACACTGAACCTTCCAGTAGAATCAACGACTTGATAGGAAATTTTGACAATAATCTGAAGCACATCAATAGCATCTGCAAGTTTGATGAACATCAAAAGTGCTGGTTATCTAGCTCCAACGATGCCAGCGCAATCAAATTAGAATTTTCTCCTCAGTTGGAGCTTTCTTTAAGAAGAATTTCCCCGGCCAAACCAGAAGGCCAGTGGAGCGAAAATGGGCATGTGCTGAACCACTCCAATGCTTCAGCCTTTTCATCGTACAATAGCTGTAAGATGATGAAACCCCCTTCTGTGACACAACCCAATGCCCCTACTGAATCAGACACAAGTGCTGGTCAATCTCCTAGACCATTGCCAAGTCTACTGTCAGGAATTTCGGGTTGTACATACCAAGACCATGGGGTTCCAGTAAGAAACAGTCGGAAGAATATGACCCCAAAGGTTGCTGGCGGGTTTGACCAGGCTGAACATCAAATTCTGCAACCACAACTTGATCTTTTTCCAGCTCCAGATTTGGTATCTGATAAGGCGTCCGCTGGTTGTGCTCTCCATTCCATGTTCTACACGCCATCAGTCTTGCCTCGAGTACCTAATACCAGATCAACATGTGAACAAGAGGTGTCTCCCATTTCTATTGATACCTCATCCGATAACTGTCGTGATATTTCCAACCCGAGAAAAGTTGGTCATCAATATGCAGAAAACACAGATAATACTATTGAACGAGTGGCAGAGGAGTTGAAACATGACTCTCCTAGTGCTGCTACACATAGTGCCAGTAGTAGCTTATGCAATGAAACGGATCATATTAATAGCAACACGAATGGGAGCGTTTGCAACCAAACAGAAGGCAACACCTCGTCAAGTGTAGTGGATGACAAGACTGCAGCCTCTGAAAATATGAATGCATCCAATGTCTTTACCTATGAAGGAAGTAAAGGACTGGATTCTTCTCGTTCCAGGCATAGGGAAGCCGCTCTGGAGAAGTTCAGGTTGAAACGGAAAGGTCGTTGTTATGAGAAAAAGGTCAGATATCAAAGCCGGAAAAGATTGGCAGAGCAGCGACCGCGAGTTAAAGGACAATTTGTTCGTCAACGGCCTAGTGACCCACCAGCCTCGGACTCTGGATGTCGATGA 2208 43.66 MDKVELSGVYDEAMDLDLDLDLDLDLDLVLDEDDRTKRKKIKNQTVDMEMKHIHHADEDGSHKLFPKQALSVLLVEADDSTRRIIAALLRKCSYRVYAVPDGLKAWECLKGRPHNVDLILTEVDLPSISGYALLTLVMEHDICKNIPVIMMSSCDAVSMVLKCMLKGAADFLIKPIRKNELKNLWQHVWRRHTKISGKFPSYLTVGQREVVATSDNDEGSNYSSYCVASRKKIKECSEKGSDAQSSCTTPYLEAENRCMPNMQGLSPLKDGTAPKLNMSCKKRGFGAYMDKEFDILKTNIRDKSDNAAKSEACNSVPSRMKEDCVIAEIRSQNKVLRPDFYKVVDDGASEMFSYNNKDTEPSSRINDLIGNFDNNLKHINSICKFDEHQKCWLSSSNDASAIKLEFSPQLELSLRRISPAKPEGQWSENGHVLNHSNASAFSSYNSCKMMKPPSVTQPNAPTESDTSAGQSPRPLPSLLSGISGCTYQDHGVPVRNSRKNMTPKVAGGFDQAEHQILQPQLDLFPAPDLVSDKASAGCALHSMFYTPSVLPRVPNTRSTCEQEVSPISIDTSSDNCRDISNPRKVGHQYAENTDNTIERVAEELKHDSPSAATHSASSSLCNETDHINSNTNGSVCNQTEGNTSSSVVDDKTAASENMNASNVFTYEGSKGLDSSRSRHREAALEKFRLKRKGRCYEKKVRYQSRKRLAEQRPRVKGQFVRQRPSDPPASDSGCR 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13677288 13682593 - Cp4.1LG03g15690.1 Cpe03g01835 467552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01835 735 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 38 713 - -
Cpe03g01835 735 ProSiteProfiles Response regulatory domain profile. 71 189 IPR001789 GO:0000160
Cpe03g01835 735 SUPERFAMILY CheY-like 70 195 IPR011006 -
Cpe03g01835 735 MobiDBLite consensus disorder prediction 703 719 - -
Cpe03g01835 735 CDD psREC_PRR 72 175 - -
Cpe03g01835 735 PANTHER TWO-COMPONENT RESPONSE REGULATOR 38 713 IPR045279 GO:0009736
Cpe03g01835 735 MobiDBLite consensus disorder prediction 605 626 - -
Cpe03g01835 735 SMART REC_2 70 185 IPR001789 GO:0000160
Cpe03g01835 735 ProSiteProfiles CCT domain profile. 680 722 IPR010402 GO:0005515
Cpe03g01835 735 MobiDBLite consensus disorder prediction 703 735 - -
Cpe03g01835 735 Pfam CCT motif 680 722 IPR010402 GO:0005515
Cpe03g01835 735 Gene3D - 71 229 - -
Cpe03g01835 735 MobiDBLite consensus disorder prediction 610 626 - -
Cpe03g01835 735 Pfam Response regulator receiver domain 72 183 IPR001789 GO:0000160
Cpe03g01835 735 MobiDBLite consensus disorder prediction 450 475 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01835 Cpe-Chr3:13677288 Cpe20g00010 Cpe-Chr20:65704 9.88E-14 dispersed
Cpe19g00394 Cpe-Chr19:3519895 Cpe03g01835 Cpe-Chr3:13677288 3.98E-17 transposed
Cpe13g00339 Cpe-Chr13:3053370 Cpe03g01835 Cpe-Chr3:13677288 2.11E-90 wgd
Cpe03g01835 Cpe-Chr3:13677288 Cpe05g00576 Cpe-Chr5:3487535 1.18E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49297 PF00072 Response_reg 7.90E-19 CL0304 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01835 K12130 - qsu:112004762 543.117