Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01835 ATGGATAAAGTCGAGTTGAGCGGTGTGTACGACGAAGCCATGGATTTGGACTTGGACTTGGACTTGGACTTGGACCTGGACTTGGTCTTGGATGAAGATGATCGGACAAAGAGGAAGAAAATCAAGAATCAGACAGTGGACATGGAGATGAAACATATTCACCACGCCGACGAAGATGGATCACACAAGCTTTTCCCGAAACAGGCGCTTAGTGTTCTGCTTGTTGAAGCTGATGATTCTACTCGCCGGATCATCGCCGCGCTTCTTCGTAAATGCAGTTACAGAGTCTATGCTGTTCCTGATGGACTGAAGGCATGGGAATGTTTGAAGGGAAGACCGCATAATGTTGATCTCATACTTACTGAAGTGGATTTGCCATCAATATCTGGTTATGCACTACTAACGTTAGTCATGGAGCACGACATTTGCAAAAATATTCCTGTTATAATGATGTCATCTTGCGACGCAGTTAGCATGGTCTTGAAGTGTATGTTAAAAGGTGCGGCTGATTTTCTTATTAAGCCAATTAGAAAAAATGAGCTCAAGAACCTTTGGCAGCATGTTTGGAGAAGGCACACGAAGATTAGTGGGAAATTCCCCTCCTATTTAACTGTTGGACAGCGTGAAGTTGTGGCCACTTCTGATAATGATGAAGGTAGCAATTATTCAAGTTACTGTGTGGCTTCTAGAAAGAAAATTAAGGAATGCAGTGAGAAGGGAAGTGATGCCCAGAGCTCTTGTACAACACCTTACTTGGAAGCTGAGAATAGATGCATGCCAAATATGCAGGGACTGTCACCACTGAAGGATGGGACTGCTCCAAAGCTAAATATGAGTTGTAAGAAACGTGGATTTGGTGCTTATATGGACAAAGAATTTGATATACTTAAAACCAACATCAGAGATAAGTCGGATAATGCGGCCAAAAGCGAAGCTTGCAATTCAGTTCCTTCAAGAATGAAAGAAGATTGTGTTATCGCAGAAATAAGAAGCCAGAATAAAGTTTTGAGGCCTGACTTTTACAAGGTCGTCGATGATGGTGCTTCTGAGATGTTTAGTTACAACAATAAGGACACTGAACCTTCCAGTAGAATCAACGACTTGATAGGAAATTTTGACAATAATCTGAAGCACATCAATAGCATCTGCAAGTTTGATGAACATCAAAAGTGCTGGTTATCTAGCTCCAACGATGCCAGCGCAATCAAATTAGAATTTTCTCCTCAGTTGGAGCTTTCTTTAAGAAGAATTTCCCCGGCCAAACCAGAAGGCCAGTGGAGCGAAAATGGGCATGTGCTGAACCACTCCAATGCTTCAGCCTTTTCATCGTACAATAGCTGTAAGATGATGAAACCCCCTTCTGTGACACAACCCAATGCCCCTACTGAATCAGACACAAGTGCTGGTCAATCTCCTAGACCATTGCCAAGTCTACTGTCAGGAATTTCGGGTTGTACATACCAAGACCATGGGGTTCCAGTAAGAAACAGTCGGAAGAATATGACCCCAAAGGTTGCTGGCGGGTTTGACCAGGCTGAACATCAAATTCTGCAACCACAACTTGATCTTTTTCCAGCTCCAGATTTGGTATCTGATAAGGCGTCCGCTGGTTGTGCTCTCCATTCCATGTTCTACACGCCATCAGTCTTGCCTCGAGTACCTAATACCAGATCAACATGTGAACAAGAGGTGTCTCCCATTTCTATTGATACCTCATCCGATAACTGTCGTGATATTTCCAACCCGAGAAAAGTTGGTCATCAATATGCAGAAAACACAGATAATACTATTGAACGAGTGGCAGAGGAGTTGAAACATGACTCTCCTAGTGCTGCTACACATAGTGCCAGTAGTAGCTTATGCAATGAAACGGATCATATTAATAGCAACACGAATGGGAGCGTTTGCAACCAAACAGAAGGCAACACCTCGTCAAGTGTAGTGGATGACAAGACTGCAGCCTCTGAAAATATGAATGCATCCAATGTCTTTACCTATGAAGGAAGTAAAGGACTGGATTCTTCTCGTTCCAGGCATAGGGAAGCCGCTCTGGAGAAGTTCAGGTTGAAACGGAAAGGTCGTTGTTATGAGAAAAAGGTCAGATATCAAAGCCGGAAAAGATTGGCAGAGCAGCGACCGCGAGTTAAAGGACAATTTGTTCGTCAACGGCCTAGTGACCCACCAGCCTCGGACTCTGGATGTCGATGA 2208 43.66 MDKVELSGVYDEAMDLDLDLDLDLDLDLVLDEDDRTKRKKIKNQTVDMEMKHIHHADEDGSHKLFPKQALSVLLVEADDSTRRIIAALLRKCSYRVYAVPDGLKAWECLKGRPHNVDLILTEVDLPSISGYALLTLVMEHDICKNIPVIMMSSCDAVSMVLKCMLKGAADFLIKPIRKNELKNLWQHVWRRHTKISGKFPSYLTVGQREVVATSDNDEGSNYSSYCVASRKKIKECSEKGSDAQSSCTTPYLEAENRCMPNMQGLSPLKDGTAPKLNMSCKKRGFGAYMDKEFDILKTNIRDKSDNAAKSEACNSVPSRMKEDCVIAEIRSQNKVLRPDFYKVVDDGASEMFSYNNKDTEPSSRINDLIGNFDNNLKHINSICKFDEHQKCWLSSSNDASAIKLEFSPQLELSLRRISPAKPEGQWSENGHVLNHSNASAFSSYNSCKMMKPPSVTQPNAPTESDTSAGQSPRPLPSLLSGISGCTYQDHGVPVRNSRKNMTPKVAGGFDQAEHQILQPQLDLFPAPDLVSDKASAGCALHSMFYTPSVLPRVPNTRSTCEQEVSPISIDTSSDNCRDISNPRKVGHQYAENTDNTIERVAEELKHDSPSAATHSASSSLCNETDHINSNTNGSVCNQTEGNTSSSVVDDKTAASENMNASNVFTYEGSKGLDSSRSRHREAALEKFRLKRKGRCYEKKVRYQSRKRLAEQRPRVKGQFVRQRPSDPPASDSGCR 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13677288 13682593 - Cp4.1LG03g15690.1 Cpe03g01835 467552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01835 735 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 38 713 - -
Cpe03g01835 735 ProSiteProfiles Response regulatory domain profile. 71 189 IPR001789 GO:0000160
Cpe03g01835 735 SUPERFAMILY CheY-like 70 195 IPR011006 -
Cpe03g01835 735 MobiDBLite consensus disorder prediction 703 719 - -
Cpe03g01835 735 CDD psREC_PRR 72 175 - -
Cpe03g01835 735 PANTHER TWO-COMPONENT RESPONSE REGULATOR 38 713 IPR045279 GO:0009736
Cpe03g01835 735 MobiDBLite consensus disorder prediction 605 626 - -
Cpe03g01835 735 SMART REC_2 70 185 IPR001789 GO:0000160
Cpe03g01835 735 ProSiteProfiles CCT domain profile. 680 722 IPR010402 GO:0005515
Cpe03g01835 735 MobiDBLite consensus disorder prediction 703 735 - -
Cpe03g01835 735 Pfam CCT motif 680 722 IPR010402 GO:0005515
Cpe03g01835 735 Gene3D - 71 229 - -
Cpe03g01835 735 MobiDBLite consensus disorder prediction 610 626 - -
Cpe03g01835 735 Pfam Response regulator receiver domain 72 183 IPR001789 GO:0000160
Cpe03g01835 735 MobiDBLite consensus disorder prediction 450 475 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01835 K12130 PRR5; pseudo-response regulator 5 - qsu:112004762 543.117
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01835 Cpe-Chr3:13677288 Cpe20g00010 Cpe-Chr20:65704 9.88E-14 dispersed
Cpe19g00394 Cpe-Chr19:3519895 Cpe03g01835 Cpe-Chr3:13677288 3.98E-17 transposed
Cpe13g00339 Cpe-Chr13:3053370 Cpe03g01835 Cpe-Chr3:13677288 2.11E-90 wgd
Cpe03g01835 Cpe-Chr3:13677288 Cpe05g00576 Cpe-Chr5:3487535 1.18E-102 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe11g00049 . 54 258 Response Regulator Gene Family AT3G16857 51.8 3.2e-52 203.8
Cpe18g00551 CST 59 319 Response Regulator Gene Family AT3G16857 53.3 7.5e-49 192.6
Cpe06g00305 . 1 317 Response Regulator Gene Family AT4G31920 58.8 2.1e-87 320.5
Cpe04g01239 CST 18 399 Response Regulator Gene Family AT4G31920 52.6 1.5e-85 314.3
Cpe18g00551 CST 18 317 Response Regulator Gene Family AT4G31920 58.3 4.9e-76 282.7
Cpe12g00300 CCT,CST,ECH 41 320 Response Regulator Gene Family AT4G31920 51.7 2.1e-71 267.3
Cpe17g00047 CCT,CST,ECH 25 300 Response Regulator Gene Family AT4G31920 51.6 4.4e-69 259.6
Cpe08g00165 CCT,CST,ECH 19 270 Response Regulator Gene Family AT4G31920 54.9 7.6e-69 258.8
Cpe03g01344 CCT,CST,ECH 16 290 Response Regulator Gene Family AT4G31920 50.7 7.8e-66 248.8
Cpe11g00049 . 13 261 Response Regulator Gene Family AT4G31920 52.0 7.3e-64 242.3
Cpe06g00305 . 93 256 Response Regulator Gene Family AT1G67710 52.9 3.9e-39 159.8
Cpe08g00165 CCT,CST,ECH 99 261 Response Regulator Gene Family AT1G67710 52.7 6.6e-39 159.1
Cpe06g00305 . 1 349 Response Regulator Gene Family AT2G25180 62.0 6.9e-100 362.1
Cpe04g01239 CST 16 403 Response Regulator Gene Family AT2G25180 53.3 1.4e-97 354.4
Cpe18g00551 CST 16 316 Response Regulator Gene Family AT2G25180 59.8 3.4e-75 280.0
Cpe12g00300 CCT,CST,ECH 41 298 Response Regulator Gene Family AT2G25180 56.7 6.5e-74 275.8
Cpe03g01344 CCT,CST,ECH 8 310 Response Regulator Gene Family AT2G25180 51.3 1.4e-73 274.6
Cpe17g00047 CCT,CST,ECH 27 300 Response Regulator Gene Family AT2G25180 54.5 7.1e-73 272.3
Cpe11g00049 . 13 258 Response Regulator Gene Family AT2G25180 54.8 2.6e-67 253.8
Cpe07g00041 . 11 270 Response Regulator Gene Family AT2G25180 51.9 3.8e-66 250.0
Cpe12g00300 CCT,CST,ECH 102 337 Response Regulator Gene Family AT2G01760 50.6 4.4e-53 205.7
Cpe08g00165 CCT,CST,ECH 79 308 Response Regulator Gene Family AT2G01760 50.4 7.5e-53 204.9
Cpe11g00049 . 74 261 Response Regulator Gene Family AT2G01760 51.0 2.7e-47 186.4
Cpe04g01239 CST 79 288 Response Regulator Gene Family AT2G01760 53.5 2.8e-44 176.4
Cpe06g00305 . 8 314 Response Regulator Gene Family AT5G58080 56.9 3.5e-78 290.0
Cpe12g00300 CCT,CST,ECH 41 285 Response Regulator Gene Family AT5G58080 56.1 1.4e-66 251.5
Cpe18g00551 CST 15 329 Response Regulator Gene Family AT5G58080 51.9 5.8e-65 246.1
Cpe11g00049 . 11 260 Response Regulator Gene Family AT5G58080 51.0 4.6e-62 236.5
Cpe12g00300 CCT,CST,ECH 41 265 Response Regulator Gene Family AT4G16110 66.5 2.2e-78 290.8
Cpe08g00165 CCT,CST,ECH 20 241 Response Regulator Gene Family AT4G16110 66.7 2.4e-77 287.3
Cpe17g00047 CCT,CST,ECH 26 262 Response Regulator Gene Family AT4G16110 62.9 1.0e-75 282.0
Cpe03g01344 CCT,CST,ECH 12 261 Response Regulator Gene Family AT4G16110 61.1 8.5e-75 278.9
Cpe06g00305 . 11 234 Response Regulator Gene Family AT4G16110 59.5 1.8e-61 234.6
Cpe11g00049 . 12 237 Response Regulator Gene Family AT4G16110 54.0 2.5e-58 224.2
Cpe04g01239 CST 17 249 Response Regulator Gene Family AT4G16110 54.7 3.6e-57 220.3
Cpe07g00041 . 10 249 Response Regulator Gene Family AT4G16110 51.0 2.0e-55 214.5
Cpe18g00551 CST 5 290 Response Regulator Gene Family AT4G16110 52.6 1.4e-53 208.4
Cpe02g00336 . 12 138 Response Regulator Gene Family AT4G16110 70.9 5.7e-47 186.4
Cpe07g01132 . 18 284 Response Regulator Gene Family AT4G16110 50.9 2.8e-46 184.1
Cpe18g00823 . 7 172 Response Regulator Gene Family AT3G48100 65.3 3.9e-54 208.4
Cpe01g01415 . 29 162 Response Regulator Gene Family AT3G48100 70.9 1.7e-49 193.0
Cpe01g01415 . 1 175 Response Regulator Gene Family AT1G59940 64.8 2.5e-56 216.5
Cpe18g00823 . 7 148 Response Regulator Gene Family AT1G59940 66.0 3.7e-47 186.0
Cpe01g01205 . 9 161 Response Regulator Gene Family AT1G59940 56.9 1.5e-37 154.1
Cpe01g01415 . 16 199 Response Regulator Gene Family AT1G10470 64.1 1.6e-55 213.4
Cpe18g00823 . 21 148 Response Regulator Gene Family AT1G10470 71.9 6.8e-46 181.4
Cpe18g00823 . 7 172 Response Regulator Gene Family AT3G48100 65.3 3.9e-54 208.4
Cpe01g01415 . 29 162 Response Regulator Gene Family AT3G48100 70.9 1.7e-49 193.0
Cpe18g00823 . 24 172 Response Regulator Gene Family AT5G62920 68.5 2.0e-50 196.1
Cpe01g01415 . 25 175 Response Regulator Gene Family AT5G62920 66.9 5.5e-48 188.0
Cpe18g00823 . 23 171 Response Regulator Gene Family AT1G19050 68.2 2.3e-50 196.1
Cpe01g01415 . 24 185 Response Regulator Gene Family AT1G19050 58.9 4.9e-45 178.3
Cpe01g01205 . 3 165 Response Regulator Gene Family AT2G41310 61.6 4.8e-46 181.8
Cpe01g01415 . 25 158 Response Regulator Gene Family AT2G41310 58.2 3.9e-40 162.2
Cpe03g00456 . 40 168 Response Regulator Gene Family AT2G41310 59.1 7.4e-39 157.9
Cpe18g00823 . 22 148 Response Regulator Gene Family AT2G41310 60.0 1.3e-38 157.1
Cpe01g01205 . 4 165 Response Regulator Gene Family AT3G57040 62.3 1.6e-47 186.8
Cpe03g00456 . 40 170 Response Regulator Gene Family AT3G57040 62.4 1.8e-43 173.3
Cpe01g01415 . 25 158 Response Regulator Gene Family AT3G57040 58.0 2.2e-41 166.4
Cpe18g00823 . 22 148 Response Regulator Gene Family AT3G57040 60.6 2.0e-39 159.8
Cpe18g00823 . 16 171 Response Regulator Gene Family AT1G74890 69.2 7.0e-52 201.1
Cpe01g01415 . 25 187 Response Regulator Gene Family AT1G74890 60.6 7.5e-46 181.0
Cpe01g01205 . 5 166 Response Regulator Gene Family AT1G74890 54.3 2.9e-37 152.5
Cpe01g01415 . 26 159 Response Regulator Gene Family AT2G40670 54.0 4.6e-38 154.8
Cpe01g01415 . 26 159 Response Regulator Gene Family AT3G56380 53.3 5.1e-39 157.9
Cpe18g00823 . 10 154 Response Regulator Gene Family AT3G56380 56.5 3.3e-38 155.2
Cpe11g00049 . 54 258 Response Regulator Gene Family AT3G16857 51.8 3.2e-52 203.8
Cpe18g00551 CST 59 319 Response Regulator Gene Family AT3G16857 53.3 7.5e-49 192.6
Cpe12g00300 CCT,CST,ECH 41 265 Response Regulator Gene Family AT4G16110 66.5 2.2e-78 290.8
Cpe08g00165 CCT,CST,ECH 20 241 Response Regulator Gene Family AT4G16110 66.7 2.4e-77 287.3
Cpe17g00047 CCT,CST,ECH 26 262 Response Regulator Gene Family AT4G16110 62.9 1.0e-75 282.0
Cpe03g01344 CCT,CST,ECH 12 261 Response Regulator Gene Family AT4G16110 61.1 8.5e-75 278.9
Cpe06g00305 . 11 234 Response Regulator Gene Family AT4G16110 59.5 1.8e-61 234.6
Cpe11g00049 . 12 237 Response Regulator Gene Family AT4G16110 54.0 2.5e-58 224.2
Cpe04g01239 CST 17 249 Response Regulator Gene Family AT4G16110 54.7 3.6e-57 220.3
Cpe07g00041 . 10 249 Response Regulator Gene Family AT4G16110 51.0 2.0e-55 214.5
Cpe18g00551 CST 5 290 Response Regulator Gene Family AT4G16110 52.6 1.4e-53 208.4
Cpe02g00336 . 12 138 Response Regulator Gene Family AT4G16110 70.9 5.7e-47 186.4
Cpe07g01132 . 18 284 Response Regulator Gene Family AT4G16110 50.9 2.8e-46 184.1
Cpe06g00305 . 1 317 Response Regulator Gene Family AT4G31920 58.8 2.1e-87 320.5
Cpe04g01239 CST 18 399 Response Regulator Gene Family AT4G31920 52.6 1.5e-85 314.3
Cpe18g00551 CST 18 317 Response Regulator Gene Family AT4G31920 58.3 4.9e-76 282.7
Cpe12g00300 CCT,CST,ECH 41 320 Response Regulator Gene Family AT4G31920 51.7 2.1e-71 267.3
Cpe17g00047 CCT,CST,ECH 25 300 Response Regulator Gene Family AT4G31920 51.6 4.4e-69 259.6
Cpe08g00165 CCT,CST,ECH 19 270 Response Regulator Gene Family AT4G31920 54.9 7.6e-69 258.8
Cpe03g01344 CCT,CST,ECH 16 290 Response Regulator Gene Family AT4G31920 50.7 7.8e-66 248.8
Cpe11g00049 . 13 261 Response Regulator Gene Family AT4G31920 52.0 7.3e-64 242.3
Cpe06g00305 . 93 256 Response Regulator Gene Family AT1G67710 52.9 3.9e-39 159.8
Cpe08g00165 CCT,CST,ECH 99 261 Response Regulator Gene Family AT1G67710 52.7 6.6e-39 159.1
Cpe06g00305 . 1 349 Response Regulator Gene Family AT2G25180 62.0 6.9e-100 362.1
Cpe04g01239 CST 16 403 Response Regulator Gene Family AT2G25180 53.3 1.4e-97 354.4
Cpe18g00551 CST 16 316 Response Regulator Gene Family AT2G25180 59.8 3.4e-75 280.0
Cpe12g00300 CCT,CST,ECH 41 298 Response Regulator Gene Family AT2G25180 56.7 6.5e-74 275.8
Cpe03g01344 CCT,CST,ECH 8 310 Response Regulator Gene Family AT2G25180 51.3 1.4e-73 274.6
Cpe17g00047 CCT,CST,ECH 27 300 Response Regulator Gene Family AT2G25180 54.5 7.1e-73 272.3
Cpe11g00049 . 13 258 Response Regulator Gene Family AT2G25180 54.8 2.6e-67 253.8
Cpe07g00041 . 11 270 Response Regulator Gene Family AT2G25180 51.9 3.8e-66 250.0
Cpe12g00300 CCT,CST,ECH 102 337 Response Regulator Gene Family AT2G01760 50.6 4.4e-53 205.7
Cpe08g00165 CCT,CST,ECH 79 308 Response Regulator Gene Family AT2G01760 50.4 7.5e-53 204.9
Cpe11g00049 . 74 261 Response Regulator Gene Family AT2G01760 51.0 2.7e-47 186.4
Cpe04g01239 CST 79 288 Response Regulator Gene Family AT2G01760 53.5 2.8e-44 176.4
Cpe06g00305 . 8 314 Response Regulator Gene Family AT5G58080 56.9 3.5e-78 290.0
Cpe12g00300 CCT,CST,ECH 41 285 Response Regulator Gene Family AT5G58080 56.1 1.4e-66 251.5
Cpe18g00551 CST 15 329 Response Regulator Gene Family AT5G58080 51.9 5.8e-65 246.1
Cpe11g00049 . 11 260 Response Regulator Gene Family AT5G58080 51.0 4.6e-62 236.5
Cpe02g01049 . 19 565 Response Regulator Gene Family AT5G61380 50.5 2.2e-141 500.0
Cpe04g01485 . 64 324 Response Regulator Gene Family AT5G61380 60.3 6.7e-82 302.4
Cpe19g00394 . 40 216 Response Regulator Gene Family AT5G60100 70.8 2.5e-61 233.4
Cpe13g00339 CCT,ECH 27 164 Response Regulator Gene Family AT5G60100 57.2 1.7e-41 167.5
Cpe03g01835 . 63 197 Response Regulator Gene Family AT5G60100 60.0 1.4e-40 164.5
Cpe19g00394 . 69 212 Response Regulator Gene Family AT5G24470 56.3 1.4e-41 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014798 1 0 2 2 2 0 1 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 0 1 1 0 0 0 2 1 18
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49297 PF00072 Response_reg 7.90E-19 CL0304 Cpe TR