Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01844 ATGAAGAGGATTCCAGAGTCAAAAACACTCCCGTTATTACTGCCCATAGAGATGCTTCCAGAATCAAAGGTTCTTCCGGGAAATTTGTGTGTTTTGGATGATATACCAAAAGCACATGTGGCCTCAGCCAAGCAAGCTGGCCATTGGTCGAATATGCACTCAGCTAAGGTAAGAGACGTTGGAAGATCAATTGCACAAGGACTTCAAGATCCAGAAGTTTCTGCACCTATACGGACATCAAAGGGAAAATCCTCTTTCTTGGGTCAGGAAGAACCAAAGCGTGGTGTCACTTTAAAGGGTAGTAGATCTTTAATTGAGGAAGGTGGTCCAAGTTCCTTCTCTGGGGCTAGCCACCCGCCAGAGCCCGTGGATATGGATCTAATGAGAACTGTTTATGTACCCATAGGACAAAATAAACCAGACCCCTGTTGCTTGATGAAGAGTTTTTCCGTGAATGGCCCCTTTCTTGAGGATCTTTCAATCCGGGTTCCAGCCAAGAAACCAAGCCCTGCTGCTCTCTCCCCTGCAGAAAGCTTAGTTGACGAGCCGCATGACTTGGGTGTTTTATCTACCCCCTTTTCAATTCCTCGTGCATCACAAATTACAGAAACCTCTCTCCTTCCCCCAGATTCTGAGGAGAAGGAATGTGTTTGGGATGCTTCTTTGCCCCCAAGTGGCAATGTAAGTCCACACAGTAGCATTGATAGTAGCGGAGTTGTCACAGCTATGAGCATAGTTAATAGCTGTTCTAGCACATACCGAAGTGATGGAATGAGTATTGAAAGGAACTGTGAGAGTACTAAAGGAAGCATTAGAGGAGACTCTCTCGAGAGTGCAAAAACAAGTATTAGTCGAGCTAGTGATAGCAGTGGTCTCAGTGATGATAGTTGTTGGAGCAACATTACAGGAAGTGCTAATAAGCCCCACAAAGGAAACGATCCTAGGTGGAAAGCCATTCTTGCTATTCGAGCAAGAGATGGAATATTAGGCATGAACCATTTTAGACTGCTGAAAAGACTTGGATGTGGTGATATTGGTAGTGTTTACCTCTCAGAGCTAAGTGGGACTCGCTGTTTTTTTGCAATGAAAGTAATGGACAAGGCATCACTTGCTATAAGGAAGAAGTTAACGAGAGCTCAGACAGAAAGGGAGATCTTGCAGTTACTTGACCATCCATTTCTGCCGACGTTGTACACCCATTTTGAAACCGACAGATTTTCCTGTCTAGTAATGGAATATTGTCCAGGGGGAGACCTGCACACTTTGAGGCAACGGCAGCCAGGGAAACACTTCTCTGAGTATGCTGCGAGGTTTTATGCAGCAGAGGTTTTACTGGCCCTCGAGTATCTTCACATGCTGGGAGTTGTTTACAGAGACTTAAAACCAGAGAATGTACTGGTTCGTGATGATGGCCACATAATGCTCTCAGATTTTGACCTTTCACTAAGATGTGCAGTGTCACCCACCCTAATAAAAACCTCACATGATTCTGACCCATCGAAACGAGCTGCATTCTGTGTCCAGCCTGCCTGTATCGAGCCATCATCAGCTTGCATCCAACCTGCATGCTTTATTCCACGACTCTTCCCTCAGAAAAGCAAAAAGAGAAGTCCCAAGCCTCGAAGCGAGCTAAGGTTGCAATCCAGTACTTTTCCTGAGCTGGTGGCAGAGCCGACCGCCGCCCGATCCATGTCTTTTGTTGGCACCCATGAATACCTAGCCCCTGAAATCATTAAAGGAGAGGGACATGGAAGTGCTGTTGATTGGTGGACTTTTGGCATTTTCTTGCATGAACTATTGTATGGAAAAACCCCATTCAAAGGATCAGGAAACAGAGCCACACTATTCAATGTCGTGGGGCAGCAACTGAAGTTCCCAGAGTCTCCAGCTACTAGTTATGCTAGCCGAGATCTTATTCGAGGTTTGCTAGTAAAGGAGCCACAACATCGGCTCGGAGTTAAGAGGGGAGCAACCGAGATCAAGCAGCATCCTTTCTTTGAAGGTGTGAATTGGGCTTTGATACGATGCAGCACGCCCCCGGAAGTGCCAAGACCTATGGAGGCCGAACTGCCCAAGTTTGGGGTAGTTGACGCAACAGGCGTTAGCAGCAGCAGTAAGAGGATGGTTGGGACAGATGTTGTCAAGTCTGGTGGTCAATATCTTGACTTCGAATTCTTTTAA 2181 46.26 MKRIPESKTLPLLLPIEMLPESKVLPGNLCVLDDIPKAHVASAKQAGHWSNMHSAKVRDVGRSIAQGLQDPEVSAPIRTSKGKSSFLGQEEPKRGVTLKGSRSLIEEGGPSSFSGASHPPEPVDMDLMRTVYVPIGQNKPDPCCLMKSFSVNGPFLEDLSIRVPAKKPSPAALSPAESLVDEPHDLGVLSTPFSIPRASQITETSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSSGVVTAMSIVNSCSSTYRSDGMSIERNCESTKGSIRGDSLESAKTSISRASDSSGLSDDSCWSNITGSANKPHKGNDPRWKAILAIRARDGILGMNHFRLLKRLGCGDIGSVYLSELSGTRCFFAMKVMDKASLAIRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSHDSDPSKRAAFCVQPACIEPSSACIQPACFIPRLFPQKSKKRSPKPRSELRLQSSTFPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPKFGVVDATGVSSSSKRMVGTDVVKSGGQYLDFEFF 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13755082 13760611 - Cp4.1LG03g15560.1 Cpe03g01844 467561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01844 726 SUPERFAMILY Protein kinase-like (PK-like) 316 693 IPR011009 -
Cpe03g01844 726 MobiDBLite consensus disorder prediction 265 292 - -
Cpe03g01844 726 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 41 726 - -
Cpe03g01844 726 CDD STKc_phototropin_like 333 685 - -
Cpe03g01844 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Cpe03g01844 726 Gene3D Transferase(Phosphotransferase) domain 1 418 491 - -
Cpe03g01844 726 PANTHER FLIPPASE KINASE 1-RELATED 41 726 - -
Cpe03g01844 726 Gene3D Phosphorylase Kinase; domain 1 332 417 - -
Cpe03g01844 726 Gene3D Transferase(Phosphotransferase) domain 1 562 683 - -
Cpe03g01844 726 Pfam Protein kinase domain 335 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01844 726 Pfam Protein kinase domain 563 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01844 726 MobiDBLite consensus disorder prediction 69 119 - -
Cpe03g01844 726 ProSiteProfiles Protein kinase domain profile. 334 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g01844 726 SMART serkin_6 334 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01844 Cpe-Chr3:13755082 Cpe10g01239 Cpe-Chr10:9546367 0 dispersed
Cpe14g00392 Cpe-Chr14:2415706 Cpe03g01844 Cpe-Chr3:13755082 1.18E-111 dispersed
Cpe03g01844 Cpe-Chr3:13755082 Cpe08g00654 Cpe-Chr8:4456433 1.74E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62323 PF00069 Pkinase 5.80E-36 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01844 - - csv:101217551 1359.74