Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe04g00027 | ATGGCCGGAATCCCCTCTGAGGGGTTGGGAGATGACTTCTTCGAGCAGATTCTCGCAGTGCAGCCTGGTTACGCCGGCGGAGCAACCGGCGATGTTGTCTCTATTCCGATGGGCTTGCAACTTGGGTCTGGCGGCGGCGGCGATGGGTTGAGAGGGATAGCTGGGCTGCAAGGAGGCGGTGGAGGAGGAGGGATGGGTATGCCGTTGGGGCTGAATTTAGAACAAGGGTTTTTGAGACAAGAGAGGTTTAGAGATGAACTTAATAACAATAATAATAACAATAATACCACTAATAATGCTTCATCTTCTTCCACTGCTTCTTCTGGAATCACTGAGAGAGATTCTTCGGTTCAGCACATGAACGCCTTGTTTCCTTCCTTTGGACATTTGCAGCAGACTCAACAACTCCGGCCACCTCCGCCGCCGTTACATCTTCACCAGCCCTTTCACAATCAGACAAATCCCGGGATGGTTGCTGCTGTACCGCAACCTTCTCAAATCCGTCCGAGAGTTCGAGCACGACGTGGGCAAGCGACTGATCCTCATAGTATTGCCGAAAGGTTGCGTCGAGAAAGAATCGCAGAAAGAATGAAGGCCTTGCAGGAGTTGGTTCCTAGCTGCAATAAGACTGATAGAGCGGCAATGCTCGATGAAATTGTGGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGCAGACTAGGTGGGGCAGGTGCGGTGGCTCAACTTGTGGCCGATGTGCCCCTATCATCAGTCGAGGGAGAAGGCATTGAGAGCGGTGCGAATCAACAAGCATGGGAGAAATGGTCAAGTGATGGCACAGAGCAACAAGTAGCAAAACTAATGGAAGAAGATGTGGGAGCTGCCATGCAATTCCTACAATCTAAAGCTCTATGCATCATGCCCATCTCATTAGCCTCAGCCATTTTCAGGACACACCAAGCCGATCCGCCGATCATGGTTAAGCCAGAAATGAACACTCCTTAG | 999 | 49.95 | MAGIPSEGLGDDFFEQILAVQPGYAGGATGDVVSIPMGLQLGSGGGGDGLRGIAGLQGGGGGGGMGMPLGLNLEQGFLRQERFRDELNNNNNNNNTTNNASSSSTASSGITERDSSVQHMNALFPSFGHLQQTQQLRPPPPPLHLHQPFHNQTNPGMVAAVPQPSQIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGANQQAWEKWSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQADPPIMVKPEMNTP | 332 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 244529 | 250161 | + | Cp4.1LG04g01860.1 | Cpe04g00027 | 467589 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe04g00027 | 332 | SMART | finulus | 183 | 232 | IPR011598 | GO:0046983 | |
| Cpe04g00027 | 332 | Gene3D | - | 170 | 227 | IPR036638 | GO:0046983 | |
| Cpe04g00027 | 332 | PANTHER | DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED | 7 | 321 | - | - | |
| Cpe04g00027 | 332 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 7 | 321 | - | - | |
| Cpe04g00027 | 332 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 175 | 236 | IPR036638 | GO:0046983 | |
| Cpe04g00027 | 332 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 177 | 226 | IPR011598 | GO:0046983 | |
| Cpe04g00027 | 332 | MobiDBLite | consensus disorder prediction | 87 | 114 | - | - | |
| Cpe04g00027 | 332 | Pfam | Helix-loop-helix DNA-binding domain | 182 | 226 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe04g00027 | Cpe-Chr4:244529 | Cpe12g01053 | Cpe-Chr12:8773170 | 9.25E-94 | dispersed | |
| Cpe04g00027 | Cpe-Chr4:244529 | Cpe18g00556 | Cpe-Chr18:6104913 | 1.31E-62 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49306 | PF00010 | HLH | 7.50E-08 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe04g00027 | - | - | cmax:111465659 | 509.605 |