Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00031 ATGAAACATATTTTCAAGAAGTTTCATATTGGAAGCAATCACGAGCCGAATCGGCCCAATGAGAATCCGTTGCCTGGAGCAGCGTCGTCGTCAGATAATCGTCCTGCAACTGCTCCAGGGCAGATTTCCGGCAACTCTCCGTCGAGTCCTTCGTCGTCGCCGTCGCCGTCGCCGTCGCTGGTAACCACTCCCCCAGGGGGCGGAAGCACGGCTTCGGTTTCGGTAGCTCCTAATCGGTCTGACTACTTTTCTTCAGAGGAAGAGTTTCAGGTTCAGCTGGCCCTAGCTATTAGCGCCTCGAATTCCGACTTCCGGGATGATCCGGAGAAGGATCAAATTCGAGCTGCAACGCTTTTGAGCTTGGGAAATCATCGGATTGATTCCACTTCCAGGGACCAGGTAGATGCTGCCGAGGCGCTTTCGCGGCAGTATTGGGAATATAATCTCCTTGACTATGAAGAAAAAGTTGTCAATGGGTTTTATGATGTCCTCTCTACGGATTCAACAGTCCAAGGAAAAATTCCATCTCTATCTGATATTGAAGCAAGCTTTGGTAGTTCTGGCTTTGAAGTTGTAATGGTCAATATGACTGTTGATTCTGCACTAGAAGAGCTGGTGCAAATTGCTCAATGTATTGCAGATTGCCCTGGCACTGAGGTGAGAGTTTTGGTTCAGAGGCTTGCTGAGCTCGTTATGGGACACATGGGCGGACCTGTAAAGGACGCCAATTTTATGCTAGCTAGGTGGATGGAAAGAAGCACAGAGTTAAGAACTTCTCTTCACACAAGTGTGTTGCCTATTGGTTCCATTAATATTGGCCTCTCAAGACACCGTGCATTGCTTTTCAAGGTGTTAGCTGACGGTATCAAGATGCCTTGTAGGCTTGTTAAAGGTAGTCACTATACTGGTGTTGAAGAAGATGCTGTCAACATCATAAAGTTGGAGGATGAAAGGGAGTTTTTGGTTGATCTAATGGCAGCTCCTGGAACGCTTATACCAGCAGACGTATTAAATGCAAAGGACACTACTATGTTGAAGCCTTACAACCCTAAAGTAAGCAAAATTTCTTCTCTCCACTACTCTAATGATGTTGAAATTTCTTCCACGAAACCAACACCATCACTTGAGGAAAGCAGCAGTCAAAACTATGAAGCAGAGGCCAGCTCACTGGTGGATGGGAAACTGGGCTATGGAAGGACAGAGTCTGTGCCCTCAAGCTCAGGTACTGGGACTTCTCGATACAAAGGGGTCCATTCAGGTGATAGTAATGTTAGACTGAATGTCAATGTAGTTCCATTTGGTCAAAGCTCCGAGGATCCCAAAAATCTTTTTGCAGATCTTAATCCTTTCCAGATAAAAGGAACTGGAAAAAGTTTCATTCTTAATAAATCCTCTGATAATAAAATTGAGGAGCTCCAGAAACCTACTATCGGGCATCCTCCTGTACCGTTGTGGAAAAATCGAGTTGCATTCAATGCTGTTCCCAAGAAAAAAGAGTACGATTATATGGAGGGTCGTTTTCCAAGAATTAATTGTGGATATAATGATCATAATATGGCATCATCTTCTTCTGCCAACTCTACAGTCTCTGAAAGTGTCGGCCTTTGTGGTTCAGGAACATCCATTGAATCAAATGTATCAATTAGAAGTGCTGAAGTTGGAAGTTCTTCATCTTATATGAACTCTCGGTCAACATCTGCCATGATTGAGCCTAATATTTTGCCTTCTGCCATGATTGAGCCTAATATTTTGCCTTCGATTGATGAACAGAACAGAAAGCAGAATGGAGAACATTCTGGAAGTACAGACTTGCAGGATAAAAATGTTGATACTGTTGATGGATGCGATAGTTTAATCAAATTTGATAATCGTAGAAAGTTCACATATGACAGATCTGTTGGAACCAATTTGATATCGAAGGATATGAGAAGTCCCAGCCCATCAATTGATCCAAGTTCGAATAGGTTTGAGAAAGTTTATGACGATGTGGATGTAGGCCAATGTGAAATACAATGGGAGGACCTCATTATCGGTGAAAGGATTGGACTAGGTTCATATGGAGAAGTCTACAATGCTGATTGGAATGGCACAGAGGTTGCGGTGAAGAAATTCCTAGACCAGGATTTTTCTGGCGCTGCTTTAGCTGAGTTCAAAAGAGAAGTACTGATAATGCGACAGCTACGTCATCCAAATATTGTTCTTTTTATGGGTGCAGTCACTCGTCCTCCTAACCTTTCCATTGTCACCGAGTTTCTTCCAAGAGGAAGCTTGTACCGGATCATTCATCGCCCACATTGTCAAATTGATGAAAAACGCAGAATAAAAATGGCCCTTGATGTGGCTAAGGGCATGAATTGCTTGCATACAAGTCATCCAACAATTGTTCACCGAGATCTGAAGTCACCGAATCTTTTAGTTGATAAGAACTGGAATGTGAAGGTATCAGATTTTGGGTTGTCGCGCCTGAAGCACCACACATTTTTGTCATCCAAATCAACTGGAGGAACGCCTGAGTGGATGGCACCAGAGGTTCTCCGGAATGAGCCTTCAAATGAAAAGTGCGATGTTTATAGCTTTGGAATCATTCTATGGGAACTTGCTACATTGAGACTACCTTGGAGTGGTATGAATCCTATGCAAGTTGTTGGTGCAGTCGGTTTCCAGAATCGACGACTCGAAATACCCAAGGAAGTAGATCCCGCGGTTGCAAGGATAATCTGGGAATGCTGGCAAACCGATCCGAACTTACGGCCCTCATTTGCACAATTAGCCAATTTTCTTAAGCCTCTGCAGCAACTCGTCCTGCCACCGCATTCAGACCAGCCGAGTTCGTCGATGCTGCAAGAGATCTCTGTAAATTCTACACCTTGA 2871 43.99 MKHIFKKFHIGSNHEPNRPNENPLPGAASSSDNRPATAPGQISGNSPSSPSSSPSPSPSLVTTPPGGGSTASVSVAPNRSDYFSSEEEFQVQLALAISASNSDFRDDPEKDQIRAATLLSLGNHRIDSTSRDQVDAAEALSRQYWEYNLLDYEEKVVNGFYDVLSTDSTVQGKIPSLSDIEASFGSSGFEVVMVNMTVDSALEELVQIAQCIADCPGTEVRVLVQRLAELVMGHMGGPVKDANFMLARWMERSTELRTSLHTSVLPIGSINIGLSRHRALLFKVLADGIKMPCRLVKGSHYTGVEEDAVNIIKLEDEREFLVDLMAAPGTLIPADVLNAKDTTMLKPYNPKVSKISSLHYSNDVEISSTKPTPSLEESSSQNYEAEASSLVDGKLGYGRTESVPSSSGTGTSRYKGVHSGDSNVRLNVNVVPFGQSSEDPKNLFADLNPFQIKGTGKSFILNKSSDNKIEELQKPTIGHPPVPLWKNRVAFNAVPKKKEYDYMEGRFPRINCGYNDHNMASSSSANSTVSESVGLCGSGTSIESNVSIRSAEVGSSSSYMNSRSTSAMIEPNILPSAMIEPNILPSIDEQNRKQNGEHSGSTDLQDKNVDTVDGCDSLIKFDNRRKFTYDRSVGTNLISKDMRSPSPSIDPSSNRFEKVYDDVDVGQCEIQWEDLIIGERIGLGSYGEVYNADWNGTEVAVKKFLDQDFSGAALAEFKREVLIMRQLRHPNIVLFMGAVTRPPNLSIVTEFLPRGSLYRIIHRPHCQIDEKRRIKMALDVAKGMNCLHTSHPTIVHRDLKSPNLLVDKNWNVKVSDFGLSRLKHHTFLSSKSTGGTPEWMAPEVLRNEPSNEKCDVYSFGIILWELATLRLPWSGMNPMQVVGAVGFQNRRLEIPKEVDPAVARIIWECWQTDPNLRPSFAQLANFLKPLQQLVLPPHSDQPSSSMLQEISVNSTP 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 317721 328428 + Cp4.1LG04g01780.1 Cpe04g00031 467593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00031 956 MobiDBLite consensus disorder prediction 366 387 - -
Cpe04g00031 956 MobiDBLite consensus disorder prediction 15 50 - -
Cpe04g00031 956 Pfam Ethylene-responsive protein kinase Le-CTR1 137 332 - -
Cpe04g00031 956 ProSitePatterns Protein kinases ATP-binding region signature. 681 703 IPR017441 GO:0005524
Cpe04g00031 956 ProSiteProfiles Protein kinase domain profile. 675 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00031 956 MobiDBLite consensus disorder prediction 400 419 - -
Cpe04g00031 956 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Cpe04g00031 956 CDD STKc_MAP3K-like 681 927 - -
Cpe04g00031 956 PANTHER SERINE-THREONINE PROTEIN KINASE 404 949 - -
Cpe04g00031 956 PANTHER SERINE-THREONINE PROTEIN KINASE 74 412 - -
Cpe04g00031 956 SMART serkin_6 675 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00031 956 Gene3D Transferase(Phosphotransferase) domain 1 754 935 - -
Cpe04g00031 956 SUPERFAMILY Protein kinase-like (PK-like) 666 946 IPR011009 -
Cpe04g00031 956 Pfam Protein tyrosine and serine/threonine kinase 676 927 IPR001245 GO:0004672|GO:0006468
Cpe04g00031 956 MobiDBLite consensus disorder prediction 366 419 - -
Cpe04g00031 956 MobiDBLite consensus disorder prediction 1 74 - -
Cpe04g00031 956 PRINTS Tyrosine kinase catalytic domain signature 749 762 IPR001245 GO:0004672|GO:0006468
Cpe04g00031 956 PRINTS Tyrosine kinase catalytic domain signature 788 806 IPR001245 GO:0004672|GO:0006468
Cpe04g00031 956 PRINTS Tyrosine kinase catalytic domain signature 835 845 IPR001245 GO:0004672|GO:0006468
Cpe04g00031 956 PRINTS Tyrosine kinase catalytic domain signature 854 876 IPR001245 GO:0004672|GO:0006468
Cpe04g00031 956 PRINTS Tyrosine kinase catalytic domain signature 898 920 IPR001245 GO:0004672|GO:0006468
Cpe04g00031 956 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 74 412 - -
Cpe04g00031 956 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 404 949 - -
Cpe04g00031 956 Gene3D Phosphorylase Kinase; domain 1 668 752 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00031 Cpe-Chr4:317721 Cpe18g00079 Cpe-Chr18:2046181 0 dispersed
Cpe16g00766 Cpe-Chr16:7615432 Cpe04g00031 Cpe-Chr4:317721 2.88E-08 dispersed
Cpe04g00031 Cpe-Chr4:317721 Cpe02g00257 Cpe-Chr2:1330695 7.24E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62325 PF07714 PK_Tyr_Ser-Thr 6.70E-63 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00031 - - cpep:111793388 1874.75