Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00042 ATGGAAACAATTGATTCAATTACTGGTTTCTCTAATCTTCTTCAACCTCCAGATTTCTCTCAGTATGTTGAAATTGATCCGACTGGCAGATATGGAAGATATAATGAAATCCTCGGCAAAGGAGCTTCCAAGACAGTTTACAGAGCGTTTGATGAATATGAAGGGATTGAAGTTGCTTGGAACCAGGTCAAGCTCTGTAACTTCCTTCAATGCCCTGAAGATCTTGAGAGGCTATACTCTGAGATTCATCTTTTAAAAACATTGAAGCATAAGAACATTATGAAATTTTATACCTCATGGGTCGATACTGCAAATAGGAACATCAACTTTGTTACTGAAATGTTCACCTCTGGGACTTTGAGGCAATATCGGCTAAAACATAGGAGAGTTAACATTAGAGCAGTGAAGCGATGGTGCAGACAAATCTTGAGGGGTCTTCTCTATTTGCATAGCCAGAACCCTCCTGTGATCCACAGAGATCTCAAGTGCGATAACATTTTAGTTAATGGTAATCAAGGAGAAATTAAAATTGGAGATCTTGGTCTTGCTGCTATTCTCCGGAAATCGCATGCTGATCATTGCGTCGGTATGATTATCTTCTTCAAATTCTGTGAAATTTTGGTTGAAATGAGGATTGATCGAGATCCTGTAACCAATTCTTCATCCATTTCATCTTTGGCTTTCTGA 687 38.72 METIDSITGFSNLLQPPDFSQYVEIDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLCNFLQCPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHRRVNIRAVKRWCRQILRGLLYLHSQNPPVIHRDLKCDNILVNGNQGEIKIGDLGLAAILRKSHADHCVGMIIFFKFCEILVEMRIDRDPVTNSSSISSLAF 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 420447 421802 - Cp4.1LG04g01680.1 Cpe04g00042 467604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00042 228 Gene3D Phosphorylase Kinase; domain 1 18 113 - -
Cpe04g00042 228 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 14 199 - -
Cpe04g00042 228 SMART serkin_6 32 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00042 228 Pfam Protein kinase domain 35 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00042 228 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 14 199 - -
Cpe04g00042 228 ProSiteProfiles Protein kinase domain profile. 32 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00042 228 SUPERFAMILY Protein kinase-like (PK-like) 25 200 IPR011009 -
Cpe04g00042 228 Gene3D Transferase(Phosphotransferase) domain 1 115 221 - -
Cpe04g00042 228 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00042 Cpe-Chr4:420447 Cpe20g00266 Cpe-Chr20:1491133 2.43E-99 dispersed
Cpe07g00941 Cpe-Chr7:8423449 Cpe04g00042 Cpe-Chr4:420447 1.27E-44 dispersed
Cpe04g00042 Cpe-Chr4:420447 Cpe09g01001 Cpe-Chr9:8877785 2.21E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62326 PF00069 Pkinase 5.90E-33 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00042 K08867 - csv:101222641 388.267