Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g00062 | ATGGATTTGATTCCTGCAATTTCCACCGCCGCTGCCGCCATTACCACAGGCGGAGGAGGAGCTGTGAAATCCCCTGAATTTGACGCGGAAACACCCATCAAATTCCAACCAACCACCAAATCTCACTCCTTCACCAATGGTGTCCTCAAGCGCCACCACCACACGCCGCCCCCGCCTCCGTCGCTGGTCTACAAAGAATGCCTCAAGAATCACGCTGCCAGTATGGGCGGCCATGCTTTGGACGGCTGCGGCGAGTTCATGCCGTCCCCTACCGCTACTACCACAGATCCAACCTCTTTCAAATGCGCCGCCTGTGGCTGCCATCGGAATTTCCACCGCCGTGACCCGGAAGATACAATCGCCACTCCGACAACAACTCATGTCATTGAGTATCAACCCCACCACCGTCATCATCCGCCGCCGCACAGAAGCCCAAACTCTGCCTCTCCTCCACCGATCTCCTCCTCGTACTACCCTTCAGCACCCCACATGCTTCTCGCCTTATCCGGCGGCATGACAGAGAACGCCGGTGGCGGATTCCACCACTCAATTCTGACGCCGAGTTCGAATTCGAGAAAACGATTCAGATCGAAATTTACTCAAAATCAAAAGGATAAAATGTATGAATTTGCAGAGAAAGTAGGATGGAAGATTCAGAAACGAGACGAGGATTTGATTCAAGACTTCTGTAGCCACGTCGGAGTCGACAGAGGCGTTCTCAAAGTCTGGATGCATAACAACAAGAACACTCTCTGTAAAAAAGACAACGCCCAAAACATCAACGGCCACGGCGATGGAGACAACGACACAAAAATTAACCGCGCCGGCGCAAATGGGTCATCATCTTCCTCTTGA | 855 | 52.51 | MDLIPAISTAAAAITTGGGGAVKSPEFDAETPIKFQPTTKSHSFTNGVLKRHHHTPPPPPSLVYKECLKNHAASMGGHALDGCGEFMPSPTATTTDPTSFKCAACGCHRNFHRRDPEDTIATPTTTHVIEYQPHHRHHPPPHRSPNSASPPPISSSYYPSAPHMLLALSGGMTENAGGGFHHSILTPSSNSRKRFRSKFTQNQKDKMYEFAEKVGWKIQKRDEDLIQDFCSHVGVDRGVLKVWMHNNKNTLCKKDNAQNINGHGDGDNDTKINRAGANGSSSSS | 284 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 611328 | 612182 | + | Cp4.1LG04g01540.1 | Cpe04g00062 | 467624 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g00062 | 284 | MobiDBLite | consensus disorder prediction | 260 | 284 | - | - | |
Cpe04g00062 | 284 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 64 | 115 | IPR006456 | - | |
Cpe04g00062 | 284 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 192 | 249 | IPR006455 | - | |
Cpe04g00062 | 284 | Gene3D | - | 184 | 253 | - | - | |
Cpe04g00062 | 284 | PANTHER | HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN | 12 | 264 | - | - | |
Cpe04g00062 | 284 | Pfam | ZF-HD protein dimerisation region | 63 | 116 | IPR006456 | - | |
Cpe04g00062 | 284 | SUPERFAMILY | Homeodomain-like | 186 | 251 | IPR009057 | - | |
Cpe04g00062 | 284 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 12 | 264 | - | - | |
Cpe04g00062 | 284 | MobiDBLite | consensus disorder prediction | 132 | 156 | - | - | |
Cpe04g00062 | 284 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 64 | 115 | IPR006456 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g00062 | Cpe-Chr4:611328 | Cpe09g00178 | Cpe-Chr9:1036932 | 9.97E-60 | dispersed | |
Cpe01g02394 | Cpe-Chr1:19993956 | Cpe04g00062 | Cpe-Chr4:611328 | 5.58E-85 | wgd | |
Cpe13g00949 | Cpe-Chr13:7977814 | Cpe04g00062 | Cpe-Chr4:611328 | 3.63E-89 | wgd | |
Cpe03g00513 | Cpe-Chr3:3026427 | Cpe04g00062 | Cpe-Chr4:611328 | 7.46E-132 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49310 | PF04770 | ZF-HD_dimer | 3.80E-28 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g00062 | - | - | csv:101204974 | 430.254 |