Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00062 ATGGATTTGATTCCTGCAATTTCCACCGCCGCTGCCGCCATTACCACAGGCGGAGGAGGAGCTGTGAAATCCCCTGAATTTGACGCGGAAACACCCATCAAATTCCAACCAACCACCAAATCTCACTCCTTCACCAATGGTGTCCTCAAGCGCCACCACCACACGCCGCCCCCGCCTCCGTCGCTGGTCTACAAAGAATGCCTCAAGAATCACGCTGCCAGTATGGGCGGCCATGCTTTGGACGGCTGCGGCGAGTTCATGCCGTCCCCTACCGCTACTACCACAGATCCAACCTCTTTCAAATGCGCCGCCTGTGGCTGCCATCGGAATTTCCACCGCCGTGACCCGGAAGATACAATCGCCACTCCGACAACAACTCATGTCATTGAGTATCAACCCCACCACCGTCATCATCCGCCGCCGCACAGAAGCCCAAACTCTGCCTCTCCTCCACCGATCTCCTCCTCGTACTACCCTTCAGCACCCCACATGCTTCTCGCCTTATCCGGCGGCATGACAGAGAACGCCGGTGGCGGATTCCACCACTCAATTCTGACGCCGAGTTCGAATTCGAGAAAACGATTCAGATCGAAATTTACTCAAAATCAAAAGGATAAAATGTATGAATTTGCAGAGAAAGTAGGATGGAAGATTCAGAAACGAGACGAGGATTTGATTCAAGACTTCTGTAGCCACGTCGGAGTCGACAGAGGCGTTCTCAAAGTCTGGATGCATAACAACAAGAACACTCTCTGTAAAAAAGACAACGCCCAAAACATCAACGGCCACGGCGATGGAGACAACGACACAAAAATTAACCGCGCCGGCGCAAATGGGTCATCATCTTCCTCTTGA 855 52.51 MDLIPAISTAAAAITTGGGGAVKSPEFDAETPIKFQPTTKSHSFTNGVLKRHHHTPPPPPSLVYKECLKNHAASMGGHALDGCGEFMPSPTATTTDPTSFKCAACGCHRNFHRRDPEDTIATPTTTHVIEYQPHHRHHPPPHRSPNSASPPPISSSYYPSAPHMLLALSGGMTENAGGGFHHSILTPSSNSRKRFRSKFTQNQKDKMYEFAEKVGWKIQKRDEDLIQDFCSHVGVDRGVLKVWMHNNKNTLCKKDNAQNINGHGDGDNDTKINRAGANGSSSSS 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 611328 612182 + Cp4.1LG04g01540.1 Cpe04g00062 467624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00062 284 MobiDBLite consensus disorder prediction 260 284 - -
Cpe04g00062 284 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 64 115 IPR006456 -
Cpe04g00062 284 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 192 249 IPR006455 -
Cpe04g00062 284 Gene3D - 184 253 - -
Cpe04g00062 284 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 12 264 - -
Cpe04g00062 284 Pfam ZF-HD protein dimerisation region 63 116 IPR006456 -
Cpe04g00062 284 SUPERFAMILY Homeodomain-like 186 251 IPR009057 -
Cpe04g00062 284 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 264 - -
Cpe04g00062 284 MobiDBLite consensus disorder prediction 132 156 - -
Cpe04g00062 284 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 115 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00062 Cpe-Chr4:611328 Cpe09g00178 Cpe-Chr9:1036932 9.97E-60 dispersed
Cpe01g02394 Cpe-Chr1:19993956 Cpe04g00062 Cpe-Chr4:611328 5.58E-85 wgd
Cpe13g00949 Cpe-Chr13:7977814 Cpe04g00062 Cpe-Chr4:611328 3.63E-89 wgd
Cpe03g00513 Cpe-Chr3:3026427 Cpe04g00062 Cpe-Chr4:611328 7.46E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49310 PF04770 ZF-HD_dimer 3.80E-28 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00062 - - csv:101204974 430.254