Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00071 ATGGAGGCGCCAGCTTTGATTTTGAAGAACGAGGAGAATCTAAGAATATGTTGGACGGAAGGCCAAGTTCCGGCCACCAGGCGTGTCAAGAGACGGCGGAGAGATCCCTCCACTGCCTCTGCCATCGATCAAACTAAAAATAAGCAGCAATCCGATCAAGCTCCGACCACCACAACGAAGCGGAGCTCAAGATTTCGCGGCGTCAGCAGACATAGATGGACGGGTCGGTTTGAAGCTCATTTATGGGATAAGCTTTCTTGGAACTTGACACAAAAGAAGAAGGGTAAACAAGCACTCAAGTACTGGGGTGTAACAACAATCACTAATTTTCAGATATCAGATTATGAGAAGGAGATTGAGATAATGCAGACAATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGGAAAAGCAGTGGATTCTCAAGAGGTGTGTCAAAATATAGAGGAGTGGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATTGGGAGAGTTTATGGGAACAAGTACCTCTACCTTGGAACTTATGGCACTCAAGAGGAAGCTGCTCGAGCTTACGATATGGCTGCCATTGAATACCGAGGGATCAATGCAGTTACCAACTTCGACTGGAGCAATTACATGGCCTGGCTGAAACCTCCGCTGCCACCCGTTGCCACCCCGAACGAATCCCATATGACATCGGACCCTCTCAAGGAGCTCTGCAACTCCAGCTCCATCATCCCAGCAGAAGAAACTTCCCTTTTCCAAAACCATCACTACCACGACAATTCCTTCCATTCTCTTCAAAAGCAAGAGCTTCTTCATAAAAGCTGCAGCATTCCTCTCAACAGTTATGTTAAATCTTCTCCATCAGCTCTCAACCTCCTTCTTCGATCTTCATTTTTCAAGAAACTCATCGAGACCAACTCCAACCTTTCGGTGGATGAGGCTGATAATGGAGAAGAAGCAAAGACTCGAGCTGTGCTTGACAATGTGTTTGATGAATTTGGAGACGTCTTCTGTGATAGACTTACAGATGAAACGTTTGTTTGCAGCTCCGACAAAGAGCTGCAAGAAAGTGAGCTTCATTCGTTCTTAAATGGCTCATTTCATCGCTTCAAAGCATCCTGA 1119 45.84 MEAPALILKNEENLRICWTEGQVPATRRVKRRRRDPSTASAIDQTKNKQQSDQAPTTTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNLTQKKKGKQALKYWGVTTITNFQISDYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYGTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPLPPVATPNESHMTSDPLKELCNSSSIIPAEETSLFQNHHYHDNSFHSLQKQELLHKSCSIPLNSYVKSSPSALNLLLRSSFFKKLIETNSNLSVDEADNGEEAKTRAVLDNVFDEFGDVFCDRLTDETFVCSSDKELQESELHSFLNGSFHRFKAS 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 701290 706045 - Cp4.1LG04g01410.1 Cpe04g00071 467633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00071 372 Pfam AP2 domain 146 197 IPR001471 GO:0003700|GO:0006355
Cpe04g00071 372 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 357 - -
Cpe04g00071 372 SUPERFAMILY DNA-binding domain 146 207 IPR016177 GO:0003677
Cpe04g00071 372 SMART rav1_2 147 211 IPR001471 GO:0003700|GO:0006355
Cpe04g00071 372 SMART rav1_2 64 117 IPR001471 GO:0003700|GO:0006355
Cpe04g00071 372 CDD AP2 146 207 IPR001471 GO:0003700|GO:0006355
Cpe04g00071 372 MobiDBLite consensus disorder prediction 40 63 - -
Cpe04g00071 372 MobiDBLite consensus disorder prediction 26 65 - -
Cpe04g00071 372 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700|GO:0006355
Cpe04g00071 372 PRINTS Ethylene responsive element binding protein signature 187 207 IPR001471 GO:0003700|GO:0006355
Cpe04g00071 372 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Cpe04g00071 372 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 12 357 - -
Cpe04g00071 372 Gene3D AP2/ERF domain 63 97 IPR036955 GO:0003700|GO:0006355
Cpe04g00071 372 Gene3D AP2/ERF domain 146 206 IPR036955 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00523 Cpe04g00071 CCT
Cpe03g00523 Cpe04g00071 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00071 Cpe-Chr4:701290 Cpe18g00584 Cpe-Chr18:6264092 1.39E-86 dispersed
Cpe03g00523 Cpe-Chr3:3083080 Cpe04g00071 Cpe-Chr4:701290 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49311 PF00847 AP2 4.50E-13 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00071 - - csv:101210782 605.52