Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g00071 | ATGGAGGCGCCAGCTTTGATTTTGAAGAACGAGGAGAATCTAAGAATATGTTGGACGGAAGGCCAAGTTCCGGCCACCAGGCGTGTCAAGAGACGGCGGAGAGATCCCTCCACTGCCTCTGCCATCGATCAAACTAAAAATAAGCAGCAATCCGATCAAGCTCCGACCACCACAACGAAGCGGAGCTCAAGATTTCGCGGCGTCAGCAGACATAGATGGACGGGTCGGTTTGAAGCTCATTTATGGGATAAGCTTTCTTGGAACTTGACACAAAAGAAGAAGGGTAAACAAGCACTCAAGTACTGGGGTGTAACAACAATCACTAATTTTCAGATATCAGATTATGAGAAGGAGATTGAGATAATGCAGACAATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGGAAAAGCAGTGGATTCTCAAGAGGTGTGTCAAAATATAGAGGAGTGGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATTGGGAGAGTTTATGGGAACAAGTACCTCTACCTTGGAACTTATGGCACTCAAGAGGAAGCTGCTCGAGCTTACGATATGGCTGCCATTGAATACCGAGGGATCAATGCAGTTACCAACTTCGACTGGAGCAATTACATGGCCTGGCTGAAACCTCCGCTGCCACCCGTTGCCACCCCGAACGAATCCCATATGACATCGGACCCTCTCAAGGAGCTCTGCAACTCCAGCTCCATCATCCCAGCAGAAGAAACTTCCCTTTTCCAAAACCATCACTACCACGACAATTCCTTCCATTCTCTTCAAAAGCAAGAGCTTCTTCATAAAAGCTGCAGCATTCCTCTCAACAGTTATGTTAAATCTTCTCCATCAGCTCTCAACCTCCTTCTTCGATCTTCATTTTTCAAGAAACTCATCGAGACCAACTCCAACCTTTCGGTGGATGAGGCTGATAATGGAGAAGAAGCAAAGACTCGAGCTGTGCTTGACAATGTGTTTGATGAATTTGGAGACGTCTTCTGTGATAGACTTACAGATGAAACGTTTGTTTGCAGCTCCGACAAAGAGCTGCAAGAAAGTGAGCTTCATTCGTTCTTAAATGGCTCATTTCATCGCTTCAAAGCATCCTGA | 1119 | 45.84 | MEAPALILKNEENLRICWTEGQVPATRRVKRRRRDPSTASAIDQTKNKQQSDQAPTTTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNLTQKKKGKQALKYWGVTTITNFQISDYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYGTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPLPPVATPNESHMTSDPLKELCNSSSIIPAEETSLFQNHHYHDNSFHSLQKQELLHKSCSIPLNSYVKSSPSALNLLLRSSFFKKLIETNSNLSVDEADNGEEAKTRAVLDNVFDEFGDVFCDRLTDETFVCSSDKELQESELHSFLNGSFHRFKAS | 372 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 701290 | 706045 | - | Cp4.1LG04g01410.1 | Cpe04g00071 | 467633 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g00071 | 372 | Pfam | AP2 domain | 146 | 197 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g00071 | 372 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 12 | 357 | - | - | |
Cpe04g00071 | 372 | SUPERFAMILY | DNA-binding domain | 146 | 207 | IPR016177 | GO:0003677 | |
Cpe04g00071 | 372 | SMART | rav1_2 | 147 | 211 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g00071 | 372 | SMART | rav1_2 | 64 | 117 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g00071 | 372 | CDD | AP2 | 146 | 207 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g00071 | 372 | MobiDBLite | consensus disorder prediction | 40 | 63 | - | - | |
Cpe04g00071 | 372 | MobiDBLite | consensus disorder prediction | 26 | 65 | - | - | |
Cpe04g00071 | 372 | ProSiteProfiles | AP2/ERF domain profile. | 147 | 205 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g00071 | 372 | PRINTS | Ethylene responsive element binding protein signature | 187 | 207 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g00071 | 372 | PRINTS | Ethylene responsive element binding protein signature | 65 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe04g00071 | 372 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 12 | 357 | - | - | |
Cpe04g00071 | 372 | Gene3D | AP2/ERF domain | 63 | 97 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe04g00071 | 372 | Gene3D | AP2/ERF domain | 146 | 206 | IPR036955 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe03g00523 | Cpe04g00071 | CCT | |
Cpe03g00523 | Cpe04g00071 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g00071 | Cpe-Chr4:701290 | Cpe18g00584 | Cpe-Chr18:6264092 | 1.39E-86 | dispersed | |
Cpe03g00523 | Cpe-Chr3:3083080 | Cpe04g00071 | Cpe-Chr4:701290 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49311 | PF00847 | AP2 | 4.50E-13 | CL0081 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g00071 | - | - | csv:101210782 | 605.52 |