Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00074 ATGGTTGTTTTGATGGTTCTGCTGCTTTCAATGGCTGTTCTAATGCCAACTCTCCGAGCTGGCATTGCTGAATATGATGACTTTTTGCTCAAGAAGGCTGTTGCAGCCGAACAAGTGGCTCATGAGGCCTACAACCCCGACCCCATGAATGTCACTAACCATCTCAACCTTCAAGTTCATTTAGCTTTTGAGGGAAGCAATAGCACGAGGAGGGGCTTAGCCAAATACAAGGGACCATGTTTGGCGACAAACCCGATCGACCGATGTTGGAGATGCAACAAAAAATGGGCCAAAAACCGCAAGAAGCTAGCCTCTTGTGTCCTTGGTTTTGGCCGAAAAACCACCGGTGGCAAAAGAGGCCGTTACTACAAAGTAACCGACCCATCAGACACTGAATTCGTAGACCCTAAACCCGGAACCCTAAGACACGCATGTATTCAAAAACGACCATTATGGATCACATTTGGACGTAGCATGATCATCAAGCTATCAAAAGAGCTATTAATATCAAGTCACAAGACCATCGATGCACGTGGTGCCAATGTCCATATAGCCTATGGTGCTGGTCTAAGCATTCAATTCTCCCGGAATGTAATCATCCACGGCCTACACATCCACCACATCGTGGCAGCCAATGGTGGCATGATCCGTGACGCATACAATCATGTGGGCCTACGAACCGTAAGCGATGGCGATGGCATATCAATCTTTGGGTCATCCAACATTTGGCTGGACCATCTCTCCATGTCAAACTGCCAAGATGGGCTCATAGACGCAATCCAAGGCTCCACAGCTATCACAGTGTCAAACTCCCATTTCACGCATCACAACGACGTGATGCTGTTTGGTGCAAGTGATTCATATCAAGGGGACTCCATCATGCAAGTGACCGTGGCATTTAACCATTTTGGTAAAGGGTTGGTGCAGCGAATGCCAAGGTGCCGATGGGGGTTCTTCCATGTGGTTAATAATGACTATACTCATTGGTTGATGTATGCAATTGGTGGGAGCCAACATCCAACCATTATAAGCCAAGGGAATAGGTTCATAGCGCCGCCAAACCCGGCTGCTAGGCAGATAACCAACAGGAACTATGCGCCGGAGAGTGTGTGGAAGACGTGGACGTGGAGGTCAGAAGGGGACTTGTTGATGAATGGTGCTTATTTTGTTCAGTCGGGGAGTTCGAGTAAGCGAAGGCCGTACAGCAGGTTGGATATGATTAAGGCCAAGCCTGGGACTTATGTTAGAAGGCTTACGCGCTTTGCGGGGTCGCTGAATTGCTATGAGGGGCGCCCATGCTAA 1302 48.54 MVVLMVLLLSMAVLMPTLRAGIAEYDDFLLKKAVAAEQVAHEAYNPDPMNVTNHLNLQVHLAFEGSNSTRRGLAKYKGPCLATNPIDRCWRCNKKWAKNRKKLASCVLGFGRKTTGGKRGRYYKVTDPSDTEFVDPKPGTLRHACIQKRPLWITFGRSMIIKLSKELLISSHKTIDARGANVHIAYGAGLSIQFSRNVIIHGLHIHHIVAANGGMIRDAYNHVGLRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITVSNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWKTWTWRSEGDLLMNGAYFVQSGSSSKRRPYSRLDMIKAKPGTYVRRLTRFAGSLNCYEGRPC 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 715832 718100 - Cp4.1LG04g01280.1 Cpe04g00074 467636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00074 433 Gene3D - 83 426 IPR012334 -
Cpe04g00074 433 Pfam Pectate lyase 169 349 IPR002022 -
Cpe04g00074 433 PANTHER PECTATE LYASE 18-RELATED 3 433 IPR045032 GO:0030570
Cpe04g00074 433 SMART amb_all 158 355 IPR002022 -
Cpe04g00074 433 Pfam Pectate lyase, N terminus 22 73 IPR007524 GO:0030570
Cpe04g00074 433 SUPERFAMILY Pectin lyase-like 84 423 IPR011050 -
Cpe04g00074 433 PANTHER PECTATE LYASE 3 433 - -
Cpe04g00074 433 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Cpe04g00074 433 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Cpe04g00074 433 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Cpe04g00074 433 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Cpe04g00074 433 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Cpe04g00074 433 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Cpe04g00074 433 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
Cpe04g00074 433 PRINTS Pollen allergen Amb family signature 404 427 IPR018082 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00524 Cpe04g00074 CCT
Cpe03g00524 Cpe04g00074 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01447 Cpe-Chr1:8663789 Cpe04g00074 Cpe-Chr4:715832 0 dispersed
Cpe04g00074 Cpe-Chr4:715832 Cpe07g00605 Cpe-Chr7:4119676 0 dispersed
Cpe03g00524 Cpe-Chr3:3085060 Cpe04g00074 Cpe-Chr4:715832 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00074 K01728 - csv:101202789 753.821