Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00096 CGAAATGGAGATCGGAATTGTTTGGCTTCTCAGAGCTGCCTGGATTGCAGGAATATTGCCTATACTTCTAGCTCTCTTACCTTTCTCCAGACTGAGTTGAAATTCACCGTACCTCAGAAATTCTTCTGCCACTTCTATGTGTGGGCTGTTATCTGGACAGCATTATTGCTAGGAACAACTTGGATGTATGCATATGTATCTACCCCGTTAATCTCAGAGCCATTTAACTTTCCTGCCATTACCAGCCAGTTGACTGGAGGTTCAAGTCTATTTTCATGGCAAAAATCTCATTCATCTCGGAGGGAGCACAGATTCCTGGTCTGGAAAGCTGTTTTTCTGCTTTTATTAATGGAAGTCCAAGTTTTGAGACGTCTTTATGAAACGATATACACTTTCAACTATAGTCCCTCCGCTCGGATGCATTTCTTTGGATATTTAACTGGCTTCTTTTTCTACACAGCAGCTCCTCTATCACTTTGTAGCAATTGTATTCCGGAAGTGTATCATTTTGCTGCAAATGGGATAGCTCAGTTCATTGTTGAAGGCAAAGGGCAAATGCTAGTTGTTGAAGTTAGTCTGTTGGATGCTGTGATTCCTCTAGCAAATTTAGGGTGGCGTCAGTGGATTGGCGCAGCTTTATTCTTTTGGGGTTGGATTCATCAGTTTCGTTGTCATCAGATTCTGGCCTCGCTGCGGGTACCTGGAGAACAAGGTGCAGAATATAAAATTCCTCATGGCGATTGGTTCGAAATTGTATCTTCTCCACACTATCTTGCTGAGATCGTTATATATGGTGGACTTGTGGTTGCTAGTGGGGGAGAAGACTTAACAATCTGGCTAATTTTTGGATTTGTGGTGGTAAATCTGGCCTTAGCAGCAGCAGAAACTCATCGATGGTATGTTCGTAAATTTGATAATTATCCGAGAAACCGGTTTGCTATTATACCATATATACACTAA 960 41.88 RNGDRNCLASQSCLDCRNIAYTSSSLTFLQTELKFTVPQKFFCHFYVWAVIWTALLLGTTWMYAYVSTPLISEPFNFPAITSQLTGGSSLFSWQKSHSSRREHRFLVWKAVFLLLLMEVQVLRRLYETIYTFNYSPSARMHFFGYLTGFFFYTAAPLSLCSNCIPEVYHFAANGIAQFIVEGKGQMLVVEVSLLDAVIPLANLGWRQWIGAALFFWGWIHQFRCHQILASLRVPGEQGAEYKIPHGDWFEIVSSPHYLAEIVIYGGLVVASGGEDLTIWLIFGFVVVNLALAAAETHRWYVRKFDNYPRNRFAIIPYIH 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 880146 883476 + Cp4.1LG04g01230.1 Cpe04g00096 467658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00096 319 PANTHER DFG10 PROTEIN 31 318 IPR039698 GO:0003865|GO:0006488
Cpe04g00096 319 Pfam 3-oxo-5-alpha-steroid 4-dehydrogenase 205 318 IPR001104 GO:0006629|GO:0016627
Cpe04g00096 319 ProSiteProfiles Steroid 5-alpha reductase C-terminal domain profile. 210 294 IPR001104 GO:0006629|GO:0016627
Cpe04g00096 319 PANTHER POLYPRENOL REDUCTASE 2-LIKE 31 318 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00096 K12345 SRD5A3; 3-oxo-5-alpha-steroid 4-dehydrogenase 3 / polyprenol reductase [EC:1.3.1.22 1.3.1.94] - csv:101215230 523.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00096 Cpe-Chr4:880146 Cpe09g00353 Cpe-Chr9:2131434 3.09E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g54 . . . . . Bpe12g00097 . . . . . . . . Sed05g2282 Cpe04g00096 . Bhi05g01779 Tan02g0746 Cmetu01g1015 . Hepe02g0462 . . Cla02g00477 Cam02g0485 Cec02g0487 Cco02g0492 Clacu02g0487 Cmu02g0483 Cre02g0818 . . . . . Csa07g00047 . . . Blo13g00532 Bda15g01062 . . . . Bma08g00778 . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01146 . Chy01g00733 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007485 1 2 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 0 1 1 1 1 1 2 1 1 1 1 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00096 Cpe_Chr04 FPKM 13.241035 13.97275 9.498575 10.183291 14.122243 12.018106 16.083767 10.850555 10.143603 11.673244