Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00103 ATGGAAGCCGAAGAGAACGATTCCTCCAAACATGACCAACCATCATCACCTCTTCTCTCCGTTGATGATGGCAACGACTTGGATGTTAAGTGTCACACCCATCGGGAGCTTCACAGCAATGAAGAACAGCATTGTTTGTTCCAGTCCGCCATTAATGAACTGGAGTTTCCATCCAATTCTAGCGTTGAATCTTTGCAGCCGAGCGATGCAATTCGTGGGGATGAGAGTCTTGTTGCAGAGACTTGTTTGGAGGTGGAGGAGACAGAGATAGCCGGGGTTAAGGCTTGTCGTAACGGTATTGAGGATATGGGGGAAGATTCAGTGAAGTTGGAGGTTGAACCGGATATTGCGGCGATGGGGTTATTGGGGGAAACGGTTTTCAATGATGTGAAAGAGGAGGATGCAGGGGCGGAGGAGGTGAAGGCTGTTGCTGAATTTGGAGAAGGTGACTTGTTATGTGAAATGGATTTGGTTGGTGGTGCTGAAAATCAGGTTGAGGGCAACGTTTTGATGGTGAATCTTCCGGACAATACTGTTGGCTGCGGTGAGACAGACACATGCTTGAGTGATGTTTTGGCTGAGCTTGCAGAAACGACTCCTTTTGTGCATGGTGTAGATACTACTGATGTAGCCAATTTGGTGGAGAGGAAAGAGGTGGAAGAAAATGCCGATGATCCCAAAGATTCGAAGGATATAGAGGTGGCAAAGCAAGAAACTTTTTCTATGGAGGATGGGAAATTAGGCGTCCCGGTGCAGCTTGTGGAGAAGTCCGAGTTGAAACAAAGTTTGGTAGATGGGGCTGTGGTGGAGGAAGGAAGGACGGAGAATTTAGCTGACAGAACTGGTGAAACTTTGAAGATGGAGAATGATTCAAGCAAAACTGATGAGGTGGGGCTGGCGAATTTTGCTGGTGAGATTGATGGGGCGGTAACTATGGAGAATACTGAAGACAAGACTGTTGAGGTGGATGGAATGTGTTTGGAAGACAAGGCTGCTGATGCGACGACGAAGACGACGACGGGAAATTTGGCAGATGAGACCCCGAAGATCAAGGGAGTGCACGTAACAGACGACAACATTGAAGTGTTGAAGATTGAAAACGTTGAAGATAGGGAAGCAGGGGTGCAAGGATTGGGTGTGGCTGATGAGAGTGCCGAGGTTGGAAAGATTGAGAATTTGGTAGATGAGACTGCAGAGGCTGAGAATGTGACAAACTACACAGCCGAATCAATGGAGAATCTGGACGACAAGACTGCACAATTGGAGGAAATAGCTATGGAAGAAGAGACTGAGGAAGCAGATGACAGGGTTTATTTGGTGGATGAAGGGATTGGATCAGAGGAGAATGATGCAAACATGACATACTTGGTGGGGGAAACAGAAGCAGCGGAGGAGGTTGAGGAGATGGATGTTACAGAGGAGGTTGATGAGGCAAGTAAAGGTAGCAGTGGGGCTAAAAGGAAGCGTGGAAAGAATTCTAAAGCTCCTGCTAGAGTTCCTTCTAGGAAGAAGGTGGAAGAAGACGTTTGCTTTATTTGTTTTGATGGGGGTGACCTTGTACTCTGTGATCGCAGAGGCTGTCCCAAGGCGTACCACCCTTCCTGTATTAATCGTGATGAGGCGTTCTTCCGAGCCAAGGGTCGATGGAATTGTGGTTGGCATCTTTGTAGTAACTGTGAGAAGACTGCCCACTACATGTGTTACACATGTACATTTTCCTTGTGCAAGGGCTGCATAAAAAATGCTGTTATTTTGTGTGTTAGAGGTAACAAAGGCTTCTGCGAGGCGTGCATGAGATTTGTTATGTTGATTGAAAAGAATGAGCAGGGAAGTACAGAAAAGGGCCAAATTGATTTTAATGACAAAACTAGCTGGGAATATCTTTTCAAGGAATACTGGACTGACCTGAAAGGAAGCCTTTCTCTAACTTTTGATGAACTTGTTCATGCAAAAAACCCATGGAAAGGATCTGAAACACTAAATAGCAGACCCGATTCACCTGGCGAGCTATATGATGGTAATGTTGATGGAGGATCAGATTTGGATGTTTCTGAAAATGAAGAATCTGGTAGTTCTAAGAAAAGAAAAGCTAAGAGAAGGTCAAAATCCCAAGCAAAGGAAACCAATTCCCCTAGTATGCCAATAATACCTGATTCTCAAGGGCCATCCACGGATAACAATGTTGAGTGGGCATCTAAAGAGCTCTTGGAGTTTGTTATGCACATGAAGAATGGTGATAGAACTGTTTTATCTCAGTTTGACGTGCAGGCTCTCTTATTAGAATATATTAAAAGAAATAAGCTTCGTGATCCTCGTAGGAAAAGTCAAATCATATGTGATTCAAGACTTGAGAATTTGTTTGGAAAGCCACGTGTAGGACATTTTGAAATGTTGAAGCTCCTAGAGTCACATTTCCTCATCAGAGAAGATGTGCAGATAAATGACCTCCAAGGGAGTGTTGCCGATACTGAATCAAGTCAGTTGGAAGGTGATGGGTACACCGATGCGTCGGGAAAAACTAGGAAAGAAAAGAAACGCCGGATGCGGAAAAAAGGTGATCAGAGAGGATTGCAGTCCAACCTTGATGACTATGCAGCCATTGATATTCACAACATTAATTTAATCTACCTGAGACGTAATTTGGTGGAATATCTGATTGAAGACGAGGAGAGTTTTCATGAAAAGGTTGTTGGTTCTTTTGTGAGGATAAGAATATCAGGCAATGCACAAAAACAAGATTTATACCGGTTGGTTCAAGTTGTAGGTACAAGCAAAGCGTCTGAGCCTTATAAAGTTGGTAAAAAGATGACAGATATCTTGCTAGAGATCTTGAATTTGAACAAGACAGAAGTGATTTCAATTGATATTATCTCGAATCAAGAGTTCACAGAGGAGGAGTGCAAGCGTCTCAGACAGAGCATTAAGTGTGGAATCCTTAACCGTCTGACTGTGGGTGACCTTCAGGAGAGAGCAATGTCGCTTCAAGATGCTAGAGTTAAGGATTGGATGGAAACCGAGATAGTTCGACTGAGTCATCTTCGTGATCGAGCAAGTGAAAAAGGGCGCAGAAAAGAATATCCTTTTTACAACATTATGGAATGTGTTGAGAAACTACAGCTTTTGAAGACACCCGAGGAGCGGCAGCGCAGACTGGAGGAGCTACCGGGAATACATACAGACCCAAATATGGATCCGAGTCATGAATCTGAAGATGAGGATGAAGCAGATGATAAGAGACAAGAAACCTACACCTTGTCAAGAGGCTCAGGCTTTAGTAGGAGGACAAGGGAGCCAGTTTCTCCTGGAAAAGCAGGTTCAAATTTGAATGATTCCTGGAGTGGTACTAGAAACTTTTCGAGCACGAATCGGGACTTGAGCAGGAACTTGTCTGGAAAAGGCTTCTCTAACCAAGGTGAAGATGCCATTGGTTCTGGTGAAATAATAAATGAAAATTCTTGGAGCCATGGAAGGGAGGGAGATGTTAAAAAACCAAATAAGTGGGACAAGCAACAAGTTTCGCCTAGCTCAGAAATGACTGCCAGGAATGCCTTGTCCGGGGCAGCGTCTGAGTTGCCTTCTGCCGCTCGTTCGGTAAATTCAGCAGCATCTCCATCTGTTGGGACTACACAAAATGCTGCTACAGTTAACGAAACAGAGAAGATTTGGCGTTATCAGGATCCATCTGGGAAAGTGCAGGGACCGTTTTCGATGGTGCAACTTCGTAAGTGGAGTAACACAGGCTATTTTCCTGCAGACTTGAGAGTATGGAGAGCCTCAGACAAGCAAGACGACTCGCTGCTTCTGACCGATGTCTTAGCGGGAAAGATTCCGAAGGATACTTCATCCGTGGACAACAGTATTCAAGCACAAGCACATGCTTCTTCTTTCGTTGCAAAGCCTCAGGGAGCTACTGTGCAGTCAGGTATGGATGTTCAGAATACTGGTACTTCAAATCCACATACTAATCCAACTTCTTATGGCCAATCTGCTGGAGGAAGATGGAAATCTCAAACTGAAGTTAGCCCTACTGGTATACCCGCCTCAGCTTCGATAGAAGTCCCCAGGTACTCGGGAGACCGATGGTCGTCTGACCATGGTAATAAGGACTTTACGAGTCTTCCTTCTCCTACTCCCAGCTCAGGAGGAACGAAGGAGCAGCCATTTCAAATGGCTACACCGTTCGCCTCCTCAGCAGGTGGTGGCAGTTTGCACGGTTCTTCACTTATGCAAGGATCCGAAAACGATTCCTTGCGCTCACATTCTGGCCTGAACGCTGCAGAAAAGGGCACGGGTTTAGGTCCTATAAATGGACTTCAAAATCATCATTCGCTGCCAGTAAGGCCTTCATCTATCATTGATGATACTTTGGTGAATCCAGCTGCAGATATTAAAAGCATTAGTGCAAATCTTCATTCTCTAGTACAATCCATCAACAGTCGTAATCCTCCTATTGAAACTCAAACTGTTGAAACAAACATTTCTTCTAGCATGCCGCCAGGACAAACTCTTCACAGGCGTTGGGGGGAGATGTCACCCGCGCAAAATGCTGCGACAGCGAGTTTTTCCACGCCTGGTTTAACCAATTTTTCATCCTCTGAGCCTTGGCGATCGATGCCTCCTATTCCGAGTAACCCGCCACACATTCAGTCTTCAACTCCGCCTAATATACCGTGGGGAATGGGTGCTCCAGAAGGTCAAAGCACCGTTCCACGACCGGGGTTGGAGTCTCAGAACCATAGCTGGGGGCCAATGCCATCAGGAAATCCAAACATGACTTGGGCTCCATCAGCACCTCCGAATGCTACTGGTATGATGTGGGGGTCTTCAGCTCAAAGTTCTGCTTCTGTAGGTACAAACCCAGGTTGGAATGCCCCAGGTCAAGGGCCACCAGTCAGAAACAACATTCAAGGATGGCAAGCGCATAGCTCGATACCACCTCAGGTAAACGCAACCCCGGGTTGGGTTGCCCCCAACCTCGGACCGATGCCACCTATGAACATGAATCCCAATTGGCATGCCCCATCAGCCAATCAGGGCATGTGGAGTAACGAACATGGTAAGAATGGGGATAGATTCTCGAACCCGGACAGTGTCTCTCACGGCGGAGATCCAGGGAACGGAGGCAAATCTTGGGGGATGCCACCATCTTATGGCGGCGGCGGCGGAAGTTCTTCTAGGCTTCCTTACAACAATAAAGGGCAAAAATTGTGCAAATATCATGAAAGTGGACATTGCAAGAAAGGAGGTTCTTGTGATTACAGGCACAAGTAG 5271 45.93 MEAEENDSSKHDQPSSPLLSVDDGNDLDVKCHTHRELHSNEEQHCLFQSAINELEFPSNSSVESLQPSDAIRGDESLVAETCLEVEETEIAGVKACRNGIEDMGEDSVKLEVEPDIAAMGLLGETVFNDVKEEDAGAEEVKAVAEFGEGDLLCEMDLVGGAENQVEGNVLMVNLPDNTVGCGETDTCLSDVLAELAETTPFVHGVDTTDVANLVERKEVEENADDPKDSKDIEVAKQETFSMEDGKLGVPVQLVEKSELKQSLVDGAVVEEGRTENLADRTGETLKMENDSSKTDEVGLANFAGEIDGAVTMENTEDKTVEVDGMCLEDKAADATTKTTTGNLADETPKIKGVHVTDDNIEVLKIENVEDREAGVQGLGVADESAEVGKIENLVDETAEAENVTNYTAESMENLDDKTAQLEEIAMEEETEEADDRVYLVDEGIGSEENDANMTYLVGETEAAEEVEEMDVTEEVDEASKGSSGAKRKRGKNSKAPARVPSRKKVEEDVCFICFDGGDLVLCDRRGCPKAYHPSCINRDEAFFRAKGRWNCGWHLCSNCEKTAHYMCYTCTFSLCKGCIKNAVILCVRGNKGFCEACMRFVMLIEKNEQGSTEKGQIDFNDKTSWEYLFKEYWTDLKGSLSLTFDELVHAKNPWKGSETLNSRPDSPGELYDGNVDGGSDLDVSENEESGSSKKRKAKRRSKSQAKETNSPSMPIIPDSQGPSTDNNVEWASKELLEFVMHMKNGDRTVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDSRLENLFGKPRVGHFEMLKLLESHFLIREDVQINDLQGSVADTESSQLEGDGYTDASGKTRKEKKRRMRKKGDQRGLQSNLDDYAAIDIHNINLIYLRRNLVEYLIEDEESFHEKVVGSFVRIRISGNAQKQDLYRLVQVVGTSKASEPYKVGKKMTDILLEILNLNKTEVISIDIISNQEFTEEECKRLRQSIKCGILNRLTVGDLQERAMSLQDARVKDWMETEIVRLSHLRDRASEKGRRKEYPFYNIMECVEKLQLLKTPEERQRRLEELPGIHTDPNMDPSHESEDEDEADDKRQETYTLSRGSGFSRRTREPVSPGKAGSNLNDSWSGTRNFSSTNRDLSRNLSGKGFSNQGEDAIGSGEIINENSWSHGREGDVKKPNKWDKQQVSPSSEMTARNALSGAASELPSAARSVNSAASPSVGTTQNAATVNETEKIWRYQDPSGKVQGPFSMVQLRKWSNTGYFPADLRVWRASDKQDDSLLLTDVLAGKIPKDTSSVDNSIQAQAHASSFVAKPQGATVQSGMDVQNTGTSNPHTNPTSYGQSAGGRWKSQTEVSPTGIPASASIEVPRYSGDRWSSDHGNKDFTSLPSPTPSSGGTKEQPFQMATPFASSAGGGSLHGSSLMQGSENDSLRSHSGLNAAEKGTGLGPINGLQNHHSLPVRPSSIIDDTLVNPAADIKSISANLHSLVQSINSRNPPIETQTVETNISSSMPPGQTLHRRWGEMSPAQNAATASFSTPGLTNFSSSEPWRSMPPIPSNPPHIQSSTPPNIPWGMGAPEGQSTVPRPGLESQNHSWGPMPSGNPNMTWAPSAPPNATGMMWGSSAQSSASVGTNPGWNAPGQGPPVRNNIQGWQAHSSIPPQVNATPGWVAPNLGPMPPMNMNPNWHAPSANQGMWSNEHGKNGDRFSNPDSVSHGGDPGNGGKSWGMPPSYGGGGGSSSRLPYNNKGQKLCKYHESGHCKKGGSCDYRHK 1756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 924782 935958 + Cp4.1LG04g01060.1 Cpe04g00103 467665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00103 1756 CDD PHD5_NSD 509 554 - -
Cpe04g00103 1756 MobiDBLite consensus disorder prediction 1670 1731 - -
Cpe04g00103 1756 MobiDBLite consensus disorder prediction 1168 1183 - -
Cpe04g00103 1756 SMART rtf1 866 976 IPR004343 GO:0003677
Cpe04g00103 1756 MobiDBLite consensus disorder prediction 1053 1212 - -
Cpe04g00103 1756 SUPERFAMILY Plus3-like 867 997 IPR036128 GO:0003677
Cpe04g00103 1756 CDD GYF 1219 1274 IPR003169 GO:0005515
Cpe04g00103 1756 MobiDBLite consensus disorder prediction 1192 1212 - -
Cpe04g00103 1756 Pfam Plus-3 domain 871 974 IPR004343 GO:0003677
Cpe04g00103 1756 MobiDBLite consensus disorder prediction 655 727 - -
Cpe04g00103 1756 Pfam GYF domain 1222 1263 IPR003169 GO:0005515
Cpe04g00103 1756 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 497 600 IPR013083 -
Cpe04g00103 1756 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 251 1755 - -
Cpe04g00103 1756 ProSiteProfiles GYF domain profile. 1219 1273 IPR003169 GO:0005515
Cpe04g00103 1756 MobiDBLite consensus disorder prediction 1294 1345 - -
Cpe04g00103 1756 MobiDBLite consensus disorder prediction 1153 1167 - -
Cpe04g00103 1756 PANTHER UNCHARACTERIZED 251 1755 - -
Cpe04g00103 1756 SMART swib_2 725 810 IPR019835 -
Cpe04g00103 1756 MobiDBLite consensus disorder prediction 1 27 - -
Cpe04g00103 1756 MobiDBLite consensus disorder prediction 706 727 - -
Cpe04g00103 1756 MobiDBLite consensus disorder prediction 1102 1137 - -
Cpe04g00103 1756 CDD Bbox1 555 580 - -
Cpe04g00103 1756 SUPERFAMILY FYVE/PHD zinc finger 505 554 IPR011011 -
Cpe04g00103 1756 ProSitePatterns Zinc finger PHD-type signature. 510 570 IPR019786 -
Cpe04g00103 1756 MobiDBLite consensus disorder prediction 823 855 - -
Cpe04g00103 1756 MobiDBLite consensus disorder prediction 462 500 - -
Cpe04g00103 1756 Pfam SWIB/MDM2 domain 732 805 IPR003121 -
Cpe04g00103 1756 Coils Coil 411 431 - -
Cpe04g00103 1756 SUPERFAMILY GYF domain 1210 1272 IPR035445 -
Cpe04g00103 1756 Gene3D - 1221 1279 IPR035445 -
Cpe04g00103 1756 Gene3D SWIB/MDM2 domain 718 813 IPR036885 -
Cpe04g00103 1756 ProSiteProfiles Zinc finger PHD-type profile. 507 573 IPR019787 -
Cpe04g00103 1756 SMART gyf_5 1220 1275 IPR003169 GO:0005515
Cpe04g00103 1756 SMART PHD_3 509 555 IPR001965 -
Cpe04g00103 1756 CDD SWIB-MDM2_like 730 805 - -
Cpe04g00103 1756 MobiDBLite consensus disorder prediction 1294 1441 - -
Cpe04g00103 1756 MobiDBLite consensus disorder prediction 1670 1695 - -
Cpe04g00103 1756 MobiDBLite consensus disorder prediction 1367 1423 - -
Cpe04g00103 1756 SUPERFAMILY SWIB/MDM2 domain 725 806 IPR036885 -
Cpe04g00103 1756 ProSiteProfiles Zinc finger C3H1-type profile. 1731 1756 IPR000571 GO:0046872
Cpe04g00103 1756 ProSiteProfiles SWIB/MDM2 domain profile. 724 807 IPR003121 -
Cpe04g00103 1756 ProSiteProfiles Plus3 domain profile. 866 999 IPR004343 GO:0003677
Cpe04g00103 1756 Gene3D - 867 997 IPR036128 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00103 - - - csv:101218325 2539.61
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00103 Cpe15g00561 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00676 Cpe-Chr1:3944153 Cpe04g00103 Cpe-Chr4:924782 0 dispersed
Cpe04g00103 Cpe-Chr4:924782 Cpe14g00547 Cpe-Chr14:3463318 0 dispersed
Cpe01g00808 Cpe-Chr1:4820522 Cpe04g00103 Cpe-Chr4:924782 1.45E-81 transposed
Cpe03g01836 Cpe-Chr3:13682561 Cpe04g00103 Cpe-Chr4:924782 3.90E-63 transposed
Cpe15g00561 Cpe-Chr15:6436404 Cpe04g00103 Cpe-Chr4:924782 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g38 . . . . . . . . Cmo19g00701 . . . . . Sed05g2290 Cpe04g00103 Cpe15g00561 Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . Cla02g00488 Cam02g0497 Cec02g0498 Cco02g0503 Clacu02g0501 Cmu02g0496 Cre02g0829 Cone12ag1185 Cone8ag1230 . . . Csa07g00034 . Cme01g01347 Blo04g00538 . . . Bpe15g00843 . . . . . . . . . Car19g00533 . . . . . . . . . Cla02g01127 Cam02g1202 Cec02g1205 Cco02g1255 Clacu02g1191 Cmu02g1153 Cre02g1463 . . Chy01g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49315 PF03126 Plus-3 1.40E-24 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00103 Cpe_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.202925 0.0 0.0 0.0