Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe04g00107 | ATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGCTCTGCTGATGAAGCCGCTCTTTGCCATGGCTGCGATCTCCATGTTCACCGCGCTAACAAGCTCGCTGGAAAGCACTCGAGATTCTCCCTACTTCAGCCGATCAAAATCGATTCTCCTCTTTGCGATATCTGTCAGGAACGGCGCGCGCTCGTATTCTGTCAACAAGATAGGGCAATTCTTTGCCGAGAATGCGACATTTCGATTCACGGAACGAACGAACATACGCAGAAGCACAATCGATTTCTTCTCACAGGTGTGAAGCTTTCTTCGACTTCTTTTTCGTATCAAACATCTTCGTCCTCCAATGGCTACAATGCTGCCATGGATGTTAAAACTCGAAGCTCCCACGCTTGCAGCAAGAGCCCTAAAATGGCCGCGCACGAAACCTCGAGTTCTCCTTCCGCTGAAAAAGCTGCTCCGTCGACAAGTAATTACAAGGTCGAAGACGGCCAAGCAAGCGACGGAGGTTCGTTCTCGACTAGCAGCATATCGGAATATTTGGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTCGATCCTTCCACCGCCGCTGCCAATCGTTTCTGTAAGTTTAACGGCGAAATTCTGGCAATTGGGAACCAAAATCTGGAGAGGCAACAGGAATCACTAGGCATCGAAAGATTTGGCAACACCTTGGAATTTGTAGGTAAATTTTCTCAAACTGGATTTTGGAATGGAGTTGGAATCTCCATGAAAACTTGTAGAGGTGAAAAAATGGCGGTGGCTGATAAGATTATCAGCAACTTCGGCTCTGAAAACAATTCTGGTAAAATCAAAAAACAAACAGAAACTAACTTTTTGTTTGTTGCTGCTGAATTGCATATTTTACCTTACTCCCACTCTTTGGATTGCCATTTCATTTGCTGA | 942 | 45.97 | MKIRCDVCDQAEASVFCSADEAALCHGCDLHVHRANKLAGKHSRFSLLQPIKIDSPLCDICQERRALVFCQQDRAILCRECDISIHGTNEHTQKHNRFLLTGVKLSSTSFSYQTSSSSNGYNAAMDVKTRSSHACSKSPKMAAHETSSSPSAEKAAPSTSNYKVEDGQASDGGSFSTSSISEYLETLPGWCVEEFLDPSTAAANRFCKFNGEILAIGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKTCRGEKMAVADKIISNFGSENNSGKIKKQTETNFLFVAAELHILPYSHSLDCHFIC | 313 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 966757 | 968544 | - | Cp4.1LG04g01010.1 | Cpe04g00107 | 467669 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe04g00107 | 313 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
| Cpe04g00107 | 313 | SMART | bboxneu5 | 53 | 100 | IPR000315 | GO:0008270 | |
| Cpe04g00107 | 313 | PANTHER | B-BOX ZINC FINGER PROTEIN 19 | 1 | 228 | - | - | |
| Cpe04g00107 | 313 | Pfam | B-box zinc finger | 56 | 92 | IPR000315 | GO:0008270 | |
| Cpe04g00107 | 313 | Pfam | B-box zinc finger | 3 | 44 | IPR000315 | GO:0008270 | |
| Cpe04g00107 | 313 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 228 | - | - | |
| Cpe04g00107 | 313 | CDD | Bbox1_BBX-like | 57 | 100 | - | - | |
| Cpe04g00107 | 313 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
| Cpe04g00107 | 313 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
| Cpe04g00107 | 313 | ProSiteProfiles | Zinc finger B-box type profile. | 53 | 100 | IPR000315 | GO:0008270 | |
| Cpe04g00107 | 313 | MobiDBLite | consensus disorder prediction | 134 | 174 | - | - | |
| Cpe04g00107 | 313 | Gene3D | Classic Zinc Finger | 1 | 100 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe04g00107 | Cpe16g00269 | CCT | |
| Cpe04g00107 | Cpe16g00269 | ECH | |
| Cpe04g00107 | Cpe15g00559 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe02g00094 | Cpe-Chr2:475486 | Cpe04g00107 | Cpe-Chr4:966757 | 6.86E-51 | dispersed | |
| Cpe04g00107 | Cpe-Chr4:966757 | Cpe14g00359 | Cpe-Chr14:2185559 | 1.09E-34 | dispersed | |
| Cpe11g00234 | Cpe-Chr11:1265779 | Cpe04g00107 | Cpe-Chr4:966757 | 6.46E-54 | wgd | |
| Cpe15g00559 | Cpe-Chr15:6419234 | Cpe04g00107 | Cpe-Chr4:966757 | 2.58E-120 | wgd | |
| Cpe16g00269 | Cpe-Chr16:4700975 | Cpe04g00107 | Cpe-Chr4:966757 | 6.02E-67 | wgd | |
| Cpe04g00107 | Cpe-Chr4:966757 | Cpe07g00385 | Cpe-Chr7:2483126 | 8.45E-55 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49316 | PF00643 | zf-B_box | 1.60E-06 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe04g00107 | - | - | cmax:111469932 | 583.178 |