Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00111 ATGGCGTCCGATTCTTCTCCGGTTAACTTCAATACAGGTCCTTCATCGCCTGATGATTCCTTCTCTAGTCCCATTGGAAACACCGTTTCGTCCTCTGGGGACGGTTATCGCCGTCGAAGCCGTCGCCGCTCATCTACTCCTTCGGAATTTGCTACACCGCCGCGTCAACGATCTCGACTGGCCTCGTCGGAAACCTCCCCGACGGCTACGGAGCCGCGCTCGCGCCGGAAAGGCGGTGGACGAAGAGCGTCTGGTAGCCGAGCGACTCCGGTGGCTGCTACACCTACTTCAACGGATGATATTCCGCCGTCGACGGAGCCTGGCGATGGTGACGACATGGATGAGGACCATCCGACCTTTGTGTGGGGGACGAATATTAGTGTTGAGGATGTTAAGGGAGCGATTATTCGGTTTTTGAGGCATTTCCGCGATCGTCAGGCGTCGCAGTCTGAGGGGGATTTTCATACCGAGGGAAAATATGCTGATGCAATCAAGAGGGTTCTTGAAATTGAAGGGGATTCGCTCGATGTGGATGCGCAGGATGTGTTCAATTACGATGCGGATTTATATACAAAGATGGTGAGGTATCCTCTTGAGGTTCTCGCAATTTTTGATATTGTTCTGATGGAAATGGTGCCCCAAATCAACCCATTGTTCGAAAAGCATATTCAAACTCGGATTTTCAATCTCAGAACTTCTACTTCAATGAGAAATCTTAACCCATCTGACATTGAGAGGATGGTATCACTGAAGGGAATGATTATACGGTGTAGTTCGATAATTCCTGAGATCAGAGAGGCGATATTTAGATGTCTTGTGTGTGGATACTACACTGACCCTGTAGCTATTGAGAGAGGGCGAATATCTGAGCCCATTATATGCTTGAAGGAAGAGTGCCAAGCAAGGAACTCAATGACGCTGGTACACAATCGATGCAGGTTTGCTGATAAGCAGATCGTTCGGCTTCAAGAGACTCCGGATGAGATACCTGAAGGAGGGACACCACATACTGTAAGCTTGTTAATGCATGACAAGCTGGTTGATACTGCAAAGCCTGGTGACAGGGTTGAGGTCACTGGGATTTACAGGGCCATGAGTGTGAGAGTTGGACCAACACAGAGATCTGTAAAATCATTATTCAAGACTTATATTGACTGTCTTCATATAAAGAAGGCTGACAAGTCAAGAATGGTGGCAGAGGACATGATAGAAGTTGAGAACCGGTTGGGAGGAAACATGAATGATATCTCATTTGATGAAGCAAAGGTGGAAGAGTTGAAGGAACTCTCCAAAAAACCTGATATATATGACAGACTAACCAGGTCATTGGCACCTAATATTTGGGAGCTTGATGATGTAAAGAAGGGCCTTCTTTGCCAGCTCTTTGGTGGGAGTGCTTTGAAATTGGCATCCGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTTGTTGGTGATCCTGGAACCAGCAAGTCTCAGCTTCTCCAATACATACATAAACTGTCTCCCCGTGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACTGCTTATGTCACCAAAGATCCTGAAACAGGGGAAACAGTGTTGGAGAGCGGAGCCTTGGTTTTGAGTGACAGGGGCATATGCTGCATCGATGAATTTGACAAAATGTCTGAAAATGCAAGGAGCATGTTGCATGAGGTGATGGAGCAACAAACCGTTTCAATAGCGAAGGCTGGAATTATTGCTTCCCTCAATGCCAGAACTTCAGTATTAGCTTGTGCAAATCCTAGTGGTTCACGTTATAACCCTCGTCTGTCTGTGATTGATAACATACACCTTCCTCCTACTTTGTTATCTAGATTTGATTTGATCTATTTAATTCTGGATAAGGCTGATGAGCAAACAGATAGGCGCCTTGCTAAGCATATTGTCTCACTACACTTTGACAATCCAGAGGGTATTGAGCAGGATTTCTTGGACCTTCATACCTTGACTTCATATGTCAGCTATGCTAGGAAAAATATTCACCCGAAATTGTCAGATGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAACTGAGGAGGAGAGGAAACTTTCCAGGCAGTAGTAAAAAGGTTATAACAGCTACTCCCCGGCAGATCGAGAGTTTAATACGTCTAAGCGAAGCCCTTGCTCGAATACGTTTCTCAGAATGGGTTGAAAAGGGCGATGTCCTTGAGGCGTTCCGCCTTCTCGAAGTTGCAATGCAACAGTCTGCAACAGATCATTCTACAGGAACCATCGACATGGATCTGATCACCACGGGAGTATCGGCAAGCGAAAGGATGCGAAGGGAGACTATATTATCGGCAACTCGCAACATTATTATGGAGAAAATGCAGCTAGGAGGACCCTCCATGCGCCTGATAGAGTTACTGGATGAGCTGAAGAAACAGAATCCTGATAATGAAGTCCACCTCAACAATCTTAGGAATGCGGTGTCGACGCTTGCAAGTGAAGGATTTGTAGCAATCCATGGTGATAGCATAAAGAGAATATGA 2538 46.14 MASDSSPVNFNTGPSSPDDSFSSPIGNTVSSSGDGYRRRSRRRSSTPSEFATPPRQRSRLASSETSPTATEPRSRRKGGGRRASGSRATPVAATPTSTDDIPPSTEPGDGDDMDEDHPTFVWGTNISVEDVKGAIIRFLRHFRDRQASQSEGDFHTEGKYADAIKRVLEIEGDSLDVDAQDVFNYDADLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYTDPVAIERGRISEPIICLKEECQARNSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTAKPGDRVEVTGIYRAMSVRVGPTQRSVKSLFKTYIDCLHIKKADKSRMVAEDMIEVENRLGGNMNDISFDEAKVEELKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGSALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPEGIEQDFLDLHTLTSYVSYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKGDVLEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRETILSATRNIIMEKMQLGGPSMRLIELLDELKKQNPDNEVHLNNLRNAVSTLASEGFVAIHGDSIKRI 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 991728 996980 + Cp4.1LG04g01090.1 Cpe04g00111 467673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00111 845 Coils Coil 805 825 - -
Cpe04g00111 845 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 258 271 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe04g00111 845 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 309 321 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe04g00111 845 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 451 462 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe04g00111 845 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 597 614 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe04g00111 845 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 749 758 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe04g00111 845 MobiDBLite consensus disorder prediction 89 103 - -
Cpe04g00111 845 SUPERFAMILY Nucleic acid-binding proteins 152 386 IPR012340 -
Cpe04g00111 845 ProSitePatterns MCM family signature. 544 552 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cpe04g00111 845 Gene3D - 236 375 IPR012340 -
Cpe04g00111 845 Gene3D - 754 836 IPR036388 -
Cpe04g00111 845 SMART mcm 232 749 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cpe04g00111 845 MobiDBLite consensus disorder prediction 46 69 - -
Cpe04g00111 845 Pfam MCM OB domain 236 365 IPR033762 -
Cpe04g00111 845 ProSiteProfiles MCM family domain profile. 435 641 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe04g00111 845 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 89 844 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe04g00111 845 Pfam MCM AAA-lid domain 661 747 IPR041562 -
Cpe04g00111 845 Pfam MCM P-loop domain 423 645 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe04g00111 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 476 491 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe04g00111 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 536 550 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe04g00111 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 564 577 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe04g00111 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 588 600 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe04g00111 845 PRINTS Mini-chromosome maintenance (MCM) protein family signature 615 623 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe04g00111 845 Gene3D - 263 315 - -
Cpe04g00111 845 Gene3D - 413 753 IPR027417 -
Cpe04g00111 845 Pfam MCM N-terminal domain 134 232 IPR027925 -
Cpe04g00111 845 MobiDBLite consensus disorder prediction 1 118 - -
Cpe04g00111 845 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 761 IPR027417 -
Cpe04g00111 845 MobiDBLite consensus disorder prediction 1 34 - -
Cpe04g00111 845 Gene3D - 125 231 - -
Cpe04g00111 845 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 89 844 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cpe04g00111 845 CDD MCM4 438 747 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00111 Cpe15g00556 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00111 Cpe-Chr4:991728 Cpe17g00747 Cpe-Chr17:5904660 6.29E-116 dispersed
Cpe08g01122 Cpe-Chr8:8422987 Cpe04g00111 Cpe-Chr4:991728 1.24E-11 dispersed
Cpe03g00916 Cpe-Chr3:5971105 Cpe04g00111 Cpe-Chr4:991728 3.60E-107 transposed
Cpe19g01218 Cpe-Chr19:8191358 Cpe04g00111 Cpe-Chr4:991728 4.97E-116 transposed
Cpe15g00556 Cpe-Chr15:6397771 Cpe04g00111 Cpe-Chr4:991728 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00111 K02212 - csv:101211850 1524.61