Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g00111 | ATGGCGTCCGATTCTTCTCCGGTTAACTTCAATACAGGTCCTTCATCGCCTGATGATTCCTTCTCTAGTCCCATTGGAAACACCGTTTCGTCCTCTGGGGACGGTTATCGCCGTCGAAGCCGTCGCCGCTCATCTACTCCTTCGGAATTTGCTACACCGCCGCGTCAACGATCTCGACTGGCCTCGTCGGAAACCTCCCCGACGGCTACGGAGCCGCGCTCGCGCCGGAAAGGCGGTGGACGAAGAGCGTCTGGTAGCCGAGCGACTCCGGTGGCTGCTACACCTACTTCAACGGATGATATTCCGCCGTCGACGGAGCCTGGCGATGGTGACGACATGGATGAGGACCATCCGACCTTTGTGTGGGGGACGAATATTAGTGTTGAGGATGTTAAGGGAGCGATTATTCGGTTTTTGAGGCATTTCCGCGATCGTCAGGCGTCGCAGTCTGAGGGGGATTTTCATACCGAGGGAAAATATGCTGATGCAATCAAGAGGGTTCTTGAAATTGAAGGGGATTCGCTCGATGTGGATGCGCAGGATGTGTTCAATTACGATGCGGATTTATATACAAAGATGGTGAGGTATCCTCTTGAGGTTCTCGCAATTTTTGATATTGTTCTGATGGAAATGGTGCCCCAAATCAACCCATTGTTCGAAAAGCATATTCAAACTCGGATTTTCAATCTCAGAACTTCTACTTCAATGAGAAATCTTAACCCATCTGACATTGAGAGGATGGTATCACTGAAGGGAATGATTATACGGTGTAGTTCGATAATTCCTGAGATCAGAGAGGCGATATTTAGATGTCTTGTGTGTGGATACTACACTGACCCTGTAGCTATTGAGAGAGGGCGAATATCTGAGCCCATTATATGCTTGAAGGAAGAGTGCCAAGCAAGGAACTCAATGACGCTGGTACACAATCGATGCAGGTTTGCTGATAAGCAGATCGTTCGGCTTCAAGAGACTCCGGATGAGATACCTGAAGGAGGGACACCACATACTGTAAGCTTGTTAATGCATGACAAGCTGGTTGATACTGCAAAGCCTGGTGACAGGGTTGAGGTCACTGGGATTTACAGGGCCATGAGTGTGAGAGTTGGACCAACACAGAGATCTGTAAAATCATTATTCAAGACTTATATTGACTGTCTTCATATAAAGAAGGCTGACAAGTCAAGAATGGTGGCAGAGGACATGATAGAAGTTGAGAACCGGTTGGGAGGAAACATGAATGATATCTCATTTGATGAAGCAAAGGTGGAAGAGTTGAAGGAACTCTCCAAAAAACCTGATATATATGACAGACTAACCAGGTCATTGGCACCTAATATTTGGGAGCTTGATGATGTAAAGAAGGGCCTTCTTTGCCAGCTCTTTGGTGGGAGTGCTTTGAAATTGGCATCCGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTTGTTGGTGATCCTGGAACCAGCAAGTCTCAGCTTCTCCAATACATACATAAACTGTCTCCCCGTGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACTGCTTATGTCACCAAAGATCCTGAAACAGGGGAAACAGTGTTGGAGAGCGGAGCCTTGGTTTTGAGTGACAGGGGCATATGCTGCATCGATGAATTTGACAAAATGTCTGAAAATGCAAGGAGCATGTTGCATGAGGTGATGGAGCAACAAACCGTTTCAATAGCGAAGGCTGGAATTATTGCTTCCCTCAATGCCAGAACTTCAGTATTAGCTTGTGCAAATCCTAGTGGTTCACGTTATAACCCTCGTCTGTCTGTGATTGATAACATACACCTTCCTCCTACTTTGTTATCTAGATTTGATTTGATCTATTTAATTCTGGATAAGGCTGATGAGCAAACAGATAGGCGCCTTGCTAAGCATATTGTCTCACTACACTTTGACAATCCAGAGGGTATTGAGCAGGATTTCTTGGACCTTCATACCTTGACTTCATATGTCAGCTATGCTAGGAAAAATATTCACCCGAAATTGTCAGATGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAACTGAGGAGGAGAGGAAACTTTCCAGGCAGTAGTAAAAAGGTTATAACAGCTACTCCCCGGCAGATCGAGAGTTTAATACGTCTAAGCGAAGCCCTTGCTCGAATACGTTTCTCAGAATGGGTTGAAAAGGGCGATGTCCTTGAGGCGTTCCGCCTTCTCGAAGTTGCAATGCAACAGTCTGCAACAGATCATTCTACAGGAACCATCGACATGGATCTGATCACCACGGGAGTATCGGCAAGCGAAAGGATGCGAAGGGAGACTATATTATCGGCAACTCGCAACATTATTATGGAGAAAATGCAGCTAGGAGGACCCTCCATGCGCCTGATAGAGTTACTGGATGAGCTGAAGAAACAGAATCCTGATAATGAAGTCCACCTCAACAATCTTAGGAATGCGGTGTCGACGCTTGCAAGTGAAGGATTTGTAGCAATCCATGGTGATAGCATAAAGAGAATATGA | 2538 | 46.14 | MASDSSPVNFNTGPSSPDDSFSSPIGNTVSSSGDGYRRRSRRRSSTPSEFATPPRQRSRLASSETSPTATEPRSRRKGGGRRASGSRATPVAATPTSTDDIPPSTEPGDGDDMDEDHPTFVWGTNISVEDVKGAIIRFLRHFRDRQASQSEGDFHTEGKYADAIKRVLEIEGDSLDVDAQDVFNYDADLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYTDPVAIERGRISEPIICLKEECQARNSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTAKPGDRVEVTGIYRAMSVRVGPTQRSVKSLFKTYIDCLHIKKADKSRMVAEDMIEVENRLGGNMNDISFDEAKVEELKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGSALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPEGIEQDFLDLHTLTSYVSYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKGDVLEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRETILSATRNIIMEKMQLGGPSMRLIELLDELKKQNPDNEVHLNNLRNAVSTLASEGFVAIHGDSIKRI | 845 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 991728 | 996980 | + | Cp4.1LG04g01090.1 | Cpe04g00111 | 467673 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g00111 | 845 | Coils | Coil | 805 | 825 | - | - | |
Cpe04g00111 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 258 | 271 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
Cpe04g00111 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 309 | 321 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
Cpe04g00111 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 451 | 462 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
Cpe04g00111 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 597 | 614 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
Cpe04g00111 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 749 | 758 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
Cpe04g00111 | 845 | MobiDBLite | consensus disorder prediction | 89 | 103 | - | - | |
Cpe04g00111 | 845 | SUPERFAMILY | Nucleic acid-binding proteins | 152 | 386 | IPR012340 | - | |
Cpe04g00111 | 845 | ProSitePatterns | MCM family signature. | 544 | 552 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
Cpe04g00111 | 845 | Gene3D | - | 236 | 375 | IPR012340 | - | |
Cpe04g00111 | 845 | Gene3D | - | 754 | 836 | IPR036388 | - | |
Cpe04g00111 | 845 | SMART | mcm | 232 | 749 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Cpe04g00111 | 845 | MobiDBLite | consensus disorder prediction | 46 | 69 | - | - | |
Cpe04g00111 | 845 | Pfam | MCM OB domain | 236 | 365 | IPR033762 | - | |
Cpe04g00111 | 845 | ProSiteProfiles | MCM family domain profile. | 435 | 641 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cpe04g00111 | 845 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM4 | 89 | 844 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
Cpe04g00111 | 845 | Pfam | MCM AAA-lid domain | 661 | 747 | IPR041562 | - | |
Cpe04g00111 | 845 | Pfam | MCM P-loop domain | 423 | 645 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cpe04g00111 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 476 | 491 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cpe04g00111 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 536 | 550 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cpe04g00111 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 564 | 577 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cpe04g00111 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 588 | 600 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cpe04g00111 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 615 | 623 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Cpe04g00111 | 845 | Gene3D | - | 263 | 315 | - | - | |
Cpe04g00111 | 845 | Gene3D | - | 413 | 753 | IPR027417 | - | |
Cpe04g00111 | 845 | Pfam | MCM N-terminal domain | 134 | 232 | IPR027925 | - | |
Cpe04g00111 | 845 | MobiDBLite | consensus disorder prediction | 1 | 118 | - | - | |
Cpe04g00111 | 845 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 446 | 761 | IPR027417 | - | |
Cpe04g00111 | 845 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Cpe04g00111 | 845 | Gene3D | - | 125 | 231 | - | - | |
Cpe04g00111 | 845 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 89 | 844 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Cpe04g00111 | 845 | CDD | MCM4 | 438 | 747 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe04g00111 | Cpe15g00556 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g00111 | Cpe-Chr4:991728 | Cpe17g00747 | Cpe-Chr17:5904660 | 6.29E-116 | dispersed | |
Cpe08g01122 | Cpe-Chr8:8422987 | Cpe04g00111 | Cpe-Chr4:991728 | 1.24E-11 | dispersed | |
Cpe03g00916 | Cpe-Chr3:5971105 | Cpe04g00111 | Cpe-Chr4:991728 | 3.60E-107 | transposed | |
Cpe19g01218 | Cpe-Chr19:8191358 | Cpe04g00111 | Cpe-Chr4:991728 | 4.97E-116 | transposed | |
Cpe15g00556 | Cpe-Chr15:6397771 | Cpe04g00111 | Cpe-Chr4:991728 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g00111 | K02212 | - | csv:101211850 | 1524.61 |