Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00114 ATGCCAGAGGTGAGGATGAGAGTTGTGGATTTTTCGTTTTCTGCTTCTTTTGCTGTTTTGATTCTTGTTTTGAATGGCGTGGAGGTCTGTAATGGCGGCGAAACAAGTCGGTTTGTGAGGAATGTTGAGAAAACTGTGGATATGCCTCTTGACAGTGATGTTCATATCACCCAAGGAGATCATGAAGGGAAGGCAGTGATTGTTTCATGGGTGACTCCAAATGAAGCAGGATCAAATAAAGTATTGTATTGGAGTGAGAACAGCAAGCTTAAGAAACATGCTTTTGGAAAAGTATATACTTATAAGTTCTATAACTACACTTCTGGCTACATTCATCACTGCACCATTTCAAACTTGAAGTACAACACCAAATACTTCTATGAAGTGGGAATTGGGTACTCTCCGAGAATGTTCTGGTTCGTCACTCCTCCAGAAGTCGGTCCGGATGTCCCCTATACGTTTGGTCTCATCGGGGATCTTGGCCAGAGTTTTGATTCGAATATAACGTTGACTCATTATGAACAAAATCCACATAAAGGGAAAACAGTTTTGTTTGTGGGGGATCTATCTTATGCTGATAACTATCCATTTCATGATAATGTAAGATGGGATACATGGGGAAGATTCACAGAGAGAAGCACTGCATATCAGCCTTGGATATGGACCGCAGGAAATCATGAAATTGATTTTGTCCCTGAAATTGGCGAAACCGAGCCGTTCAAGCCATATACGAACCGTTATCACGTCCCTTATAAAGCCTCTGAGAGCACAGCTCCGTTTTGGTACTCGATCAAAAGAGGTCCTTCGTACATCATAGTCTTGGCTTCCTATTCAGCTTATGGTAAATACACTCCTCAATACAAATGGCTTGAAATGGAGTTCCCAAAAGTGAACAGAAGCGAAACACCATGGTTGATTGTTCTGATGCATTCTCCATGGTACAACAGCTACAACTATCATTACATGGAAGGAGAAACTATGCGAGTAATGTACGAGTCATGGTTCGTAAAATACAAAGTCGATGTCGTCTTTGCTGGCCATGTCCATGCCTATGAAAGATCTGAAAGGATTTCAAATATTGCATACAACATAGTGAATGGCCGTTGTGTTCCTGTGAAAGATCAATCTGCACCTGTATACATAACAATAGGTGATGGAGGAAACCTTGAAGGCCTAGCAACAAATATGACGGAGCCACAGCCTTCGTACTCGGTGTATCGTGAAGCAAGCTTCGGGCATGCCATATTTGATATCAAGAACCGAACTCATGCATATTTCAGTTGGAACAGGAACCACGATGGCTATGCAGTTGAAGCCGATTCTCTTTGGTTTTTCAACCGACACTGGTACCCGGTGGACGAGTTGTCGTCGAGTGAGAAGAAATGA 1386 42.35 MPEVRMRVVDFSFSASFAVLILVLNGVEVCNGGETSRFVRNVEKTVDMPLDSDVHITQGDHEGKAVIVSWVTPNEAGSNKVLYWSENSKLKKHAFGKVYTYKFYNYTSGYIHHCTISNLKYNTKYFYEVGIGYSPRMFWFVTPPEVGPDVPYTFGLIGDLGQSFDSNITLTHYEQNPHKGKTVLFVGDLSYADNYPFHDNVRWDTWGRFTERSTAYQPWIWTAGNHEIDFVPEIGETEPFKPYTNRYHVPYKASESTAPFWYSIKRGPSYIIVLASYSAYGKYTPQYKWLEMEFPKVNRSETPWLIVLMHSPWYNSYNYHYMEGETMRVMYESWFVKYKVDVVFAGHVHAYERSERISNIAYNIVNGRCVPVKDQSAPVYITIGDGGNLEGLATNMTEPQPSYSVYREASFGHAIFDIKNRTHAYFSWNRNHDGYAVEADSLWFFNRHWYPVDELSSSEKK 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1019418 1023512 + Cp4.1LG04g00990.1 Cpe04g00114 467676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00114 461 CDD MPP_PAPs 148 446 IPR041792 -
Cpe04g00114 461 SUPERFAMILY Metallo-dependent phosphatases 148 453 IPR029052 -
Cpe04g00114 461 SUPERFAMILY Purple acid phosphatase, N-terminal domain 52 144 IPR008963 GO:0003993|GO:0046872
Cpe04g00114 461 PANTHER ACID PHOSPHATASE RELATED 15 458 IPR039331 GO:0003993
Cpe04g00114 461 Pfam Purple acid Phosphatase, N-terminal domain 53 132 IPR015914 GO:0003993|GO:0046872
Cpe04g00114 461 PANTHER PURPLE ACID PHOSPHATASE 15 458 - -
Cpe04g00114 461 Pfam Iron/zinc purple acid phosphatase-like protein C 377 436 IPR025733 -
Cpe04g00114 461 Gene3D - 52 146 - -
Cpe04g00114 461 Pfam Calcineurin-like phosphoesterase 153 351 IPR004843 GO:0016787
Cpe04g00114 461 Gene3D - 147 456 IPR029052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00114 K22390 ACP7; acid phosphatase type 7 - csv:101211612 861.292
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00114 Cpe-Chr4:1019418 Cpe19g00835 Cpe-Chr19:6213233 0 dispersed
Cpe04g00114 Cpe-Chr4:1019418 Cpe07g00391 Cpe-Chr7:2533218 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g11 . . . . . . . . . . . . . . . Cpe04g00114 . . . . . . . . Cla02g00499 Cam02g0509 Cec02g0509 Cco02g0515 Clacu02g0511 Cmu02g0507 Cre02g0840 . . . . . . . Cme01g01364 Blo04g00527 . . Bda14g00570 . . Bma03g00564 . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01126 . Chy01g00759 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00114 Cpe_Chr04 FPKM 9.437696 8.746945 22.050756 20.87726 31.422644 34.029816 33.020439 15.729702 15.652362 15.905154