Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00116 ATGAACAGAGCATTGCCGGAAATGTTGAACACGGCTGAGAATTGTGCTGACACTCTCACTGTTCTTGAGAGGCAGAGGGCTCGTTTCAAATGGCAACAAGATCAGCTTTTGTATCAGCAGCAACAACAGCAGCAGCAGCCATTCAATGGGATGATGGATTACGGGGCTGGATTTCCACCGTCGGATCACCTCACCGGGTTTCCGGGCTTCATGAGTGCAGCCGGCGACGGCGGCGGTGGTGGTGGGTTGTCACTTGTGGAGATGGTAATGGGAGCAGTGAAGCCTGATCCTGGTTTGGAAGATGGGTGGTCTGATCCTTCTCTGTTGTTGAATCCCCCCACTGCTTATGAACTCAATTCTTCTCTTTCTAGAACCTCCAGCTGCCCGCCGGCGGTGAATCCAGCGGCGGCGGCTGGAAGAGAAAGCTTCAAGAAAAGGAAAGCTGAGAAAGTTCAGAAACCCATTAACAACAAAGAGAAGAAGATCAAAGCAAGTTCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTATCAAAAACTACAGATCAAAACAGCACCAAGAACAACAATTCAACCACAACTACAACCACAACAAACAACAACAGAGAAACTTCAGCTGATACCTCCAAAGCCTCAGAGGTTAAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCCACTGATAGCCATAGCTTAGCAGAAAGAGCTAGAAGGGAAAAAATCAGTGAAAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGACGAGATCATAAACTATGTTCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAGTTAGCTGCAGTTAATCCAAGGCTGGACTTCAATGTGGATGATCTCTTCCTCAAAGAGGTATTTCCCCCTCCTTGCACCACCGCAACCTTCGCGGCGATTGGTGGAATTTCATCAGAGATCACAGATCCTTCATCCTACTTACAATTTAATCCAAACAATCAACAAATCGTTCCGTGTTGTGGATTAGAAATGGGAATTAATACCTCCGATGTCGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAAAATTTCCTCGATTCATCCTGCCTCACCCAATTTCAAGGCTCCTCAGGGTGGGACGTGGATTTGCAGAATCTGTACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCCTTTTCATCTCAACCTTACACAGGTAAAGATAAGATTGAAACTATGCAGTCAATTCTTCTTCCGCTTGTTCTTGCAATTATGACTGGAGAAAGAAAATTCAGAGAAATTAAGAAAGTGGATATTTCAAAATTGATAGATTGA 1374 44.61 MNRALPEMLNTAENCADTLTVLERQRARFKWQQDQLLYQQQQQQQQPFNGMMDYGAGFPPSDHLTGFPGFMSAAGDGGGGGGLSLVEMVMGAVKPDPGLEDGWSDPSLLLNPPTAYELNSSLSRTSSCPPAVNPAAAAGRESFKKRKAEKVQKPINNKEKKIKASSEEEEEEEEEEELSKTTDQNSTKNNNSTTTTTTTNNNRETSADTSKASEVKKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDDLFLKEVFPPPCTTATFAAIGGISSEITDPSSYLQFNPNNQQIVPCCGLEMGINTSDVALRRTISAPVSFPENFLDSSCLTQFQGSSGWDVDLQNLYNVGFDQGRSSNAFSSQPYTGKDKIETMQSILLPLVLAIMTGERKFREIKKVDISKLID 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1039875 1042393 - Cp4.1LG04g00930.1 Cpe04g00116 467678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00116 457 MobiDBLite consensus disorder prediction 119 238 - -
Cpe04g00116 457 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 17 410 IPR024097 GO:0006355
Cpe04g00116 457 Pfam Helix-loop-helix DNA-binding domain 233 280 IPR011598 GO:0046983
Cpe04g00116 457 Gene3D - 226 300 IPR036638 GO:0046983
Cpe04g00116 457 CDD bHLH_AtBPE_like 219 304 - -
Cpe04g00116 457 MobiDBLite consensus disorder prediction 140 167 - -
Cpe04g00116 457 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 279 IPR011598 GO:0046983
Cpe04g00116 457 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 227 298 IPR036638 GO:0046983
Cpe04g00116 457 SMART finulus 235 285 IPR011598 GO:0046983
Cpe04g00116 457 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 17 410 - -
Cpe04g00116 457 MobiDBLite consensus disorder prediction 209 238 - -
Cpe04g00116 457 Coils Coil 155 191 - -
Cpe04g00116 457 MobiDBLite consensus disorder prediction 183 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00116 Cpe-Chr4:1039875 Cpe13g00466 Cpe-Chr13:4893153 6.59E-54 dispersed
Cpe03g00389 Cpe-Chr3:2096059 Cpe04g00116 Cpe-Chr4:1039875 6.14E-38 transposed
Cpe15g00549 Cpe-Chr15:6338973 Cpe04g00116 Cpe-Chr4:1039875 2.98E-163 wgd
Cpe16g00243 Cpe-Chr16:4493168 Cpe04g00116 Cpe-Chr4:1039875 1.21E-43 wgd
Cpe04g00116 Cpe-Chr4:1039875 Cpe05g01262 Cpe-Chr5:8818978 1.64E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49318 PF00010 HLH 1.30E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00116 - - cmo:103490373 570.466