Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g00116 | ATGAACAGAGCATTGCCGGAAATGTTGAACACGGCTGAGAATTGTGCTGACACTCTCACTGTTCTTGAGAGGCAGAGGGCTCGTTTCAAATGGCAACAAGATCAGCTTTTGTATCAGCAGCAACAACAGCAGCAGCAGCCATTCAATGGGATGATGGATTACGGGGCTGGATTTCCACCGTCGGATCACCTCACCGGGTTTCCGGGCTTCATGAGTGCAGCCGGCGACGGCGGCGGTGGTGGTGGGTTGTCACTTGTGGAGATGGTAATGGGAGCAGTGAAGCCTGATCCTGGTTTGGAAGATGGGTGGTCTGATCCTTCTCTGTTGTTGAATCCCCCCACTGCTTATGAACTCAATTCTTCTCTTTCTAGAACCTCCAGCTGCCCGCCGGCGGTGAATCCAGCGGCGGCGGCTGGAAGAGAAAGCTTCAAGAAAAGGAAAGCTGAGAAAGTTCAGAAACCCATTAACAACAAAGAGAAGAAGATCAAAGCAAGTTCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTATCAAAAACTACAGATCAAAACAGCACCAAGAACAACAATTCAACCACAACTACAACCACAACAAACAACAACAGAGAAACTTCAGCTGATACCTCCAAAGCCTCAGAGGTTAAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCCACTGATAGCCATAGCTTAGCAGAAAGAGCTAGAAGGGAAAAAATCAGTGAAAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGACGAGATCATAAACTATGTTCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAGTTAGCTGCAGTTAATCCAAGGCTGGACTTCAATGTGGATGATCTCTTCCTCAAAGAGGTATTTCCCCCTCCTTGCACCACCGCAACCTTCGCGGCGATTGGTGGAATTTCATCAGAGATCACAGATCCTTCATCCTACTTACAATTTAATCCAAACAATCAACAAATCGTTCCGTGTTGTGGATTAGAAATGGGAATTAATACCTCCGATGTCGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAAAATTTCCTCGATTCATCCTGCCTCACCCAATTTCAAGGCTCCTCAGGGTGGGACGTGGATTTGCAGAATCTGTACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCCTTTTCATCTCAACCTTACACAGGTAAAGATAAGATTGAAACTATGCAGTCAATTCTTCTTCCGCTTGTTCTTGCAATTATGACTGGAGAAAGAAAATTCAGAGAAATTAAGAAAGTGGATATTTCAAAATTGATAGATTGA | 1374 | 44.61 | MNRALPEMLNTAENCADTLTVLERQRARFKWQQDQLLYQQQQQQQQPFNGMMDYGAGFPPSDHLTGFPGFMSAAGDGGGGGGLSLVEMVMGAVKPDPGLEDGWSDPSLLLNPPTAYELNSSLSRTSSCPPAVNPAAAAGRESFKKRKAEKVQKPINNKEKKIKASSEEEEEEEEEEELSKTTDQNSTKNNNSTTTTTTTNNNRETSADTSKASEVKKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDDLFLKEVFPPPCTTATFAAIGGISSEITDPSSYLQFNPNNQQIVPCCGLEMGINTSDVALRRTISAPVSFPENFLDSSCLTQFQGSSGWDVDLQNLYNVGFDQGRSSNAFSSQPYTGKDKIETMQSILLPLVLAIMTGERKFREIKKVDISKLID | 457 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1039875 | 1042393 | - | Cp4.1LG04g00930.1 | Cpe04g00116 | 467678 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g00116 | 457 | MobiDBLite | consensus disorder prediction | 119 | 238 | - | - | |
Cpe04g00116 | 457 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 17 | 410 | IPR024097 | GO:0006355 | |
Cpe04g00116 | 457 | Pfam | Helix-loop-helix DNA-binding domain | 233 | 280 | IPR011598 | GO:0046983 | |
Cpe04g00116 | 457 | Gene3D | - | 226 | 300 | IPR036638 | GO:0046983 | |
Cpe04g00116 | 457 | CDD | bHLH_AtBPE_like | 219 | 304 | - | - | |
Cpe04g00116 | 457 | MobiDBLite | consensus disorder prediction | 140 | 167 | - | - | |
Cpe04g00116 | 457 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 229 | 279 | IPR011598 | GO:0046983 | |
Cpe04g00116 | 457 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 227 | 298 | IPR036638 | GO:0046983 | |
Cpe04g00116 | 457 | SMART | finulus | 235 | 285 | IPR011598 | GO:0046983 | |
Cpe04g00116 | 457 | PANTHER | TRANSCRIPTION FACTOR BHLH63-LIKE | 17 | 410 | - | - | |
Cpe04g00116 | 457 | MobiDBLite | consensus disorder prediction | 209 | 238 | - | - | |
Cpe04g00116 | 457 | Coils | Coil | 155 | 191 | - | - | |
Cpe04g00116 | 457 | MobiDBLite | consensus disorder prediction | 183 | 208 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g00116 | Cpe-Chr4:1039875 | Cpe13g00466 | Cpe-Chr13:4893153 | 6.59E-54 | dispersed | |
Cpe03g00389 | Cpe-Chr3:2096059 | Cpe04g00116 | Cpe-Chr4:1039875 | 6.14E-38 | transposed | |
Cpe15g00549 | Cpe-Chr15:6338973 | Cpe04g00116 | Cpe-Chr4:1039875 | 2.98E-163 | wgd | |
Cpe16g00243 | Cpe-Chr16:4493168 | Cpe04g00116 | Cpe-Chr4:1039875 | 1.21E-43 | wgd | |
Cpe04g00116 | Cpe-Chr4:1039875 | Cpe05g01262 | Cpe-Chr5:8818978 | 1.64E-49 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49318 | PF00010 | HLH | 1.30E-06 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g00116 | - | - | cmo:103490373 | 570.466 |