Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00123 ATGGCGGTTTCCGGTAGCAATTCGACGGAGATTCACCCCGTTGACGAATCTTCATCCAGTTCTTCTACAACTTCTCTATCTAACTTGAAAATCTACGCTGCAATCGGTGTAATCGTTGCGTGTGTGATTGCGGCTTGTGCTTTGATCTTCCTCTGTTTCCGCAGAAATCGGGACTCGAGGAAGCACAAAATGCGGGTGAAGCACAGCTCCGGATTGATTCCTTTGGTCTCCAAGGAGATAGCCGAGATCAAAGAGTCCGATCGGACTGCGGATTGCGAGAAAGGGGAAGTGGTTAGGGTTGAGAAAAAGATGGAGATCGAGTTCGAAAGTGGAGTAGGTAAAAAGAGTCAAGAGAGCGACGTATCCGGAGGGGGTCGGAGCGACGTGTCGGTGGAGGATCAGAACTTAGGATGGGGACGGTGGTACAGCTTGAAGGAACTGGAAATGGCCACCGATGGATTTCTGGAAGAGAATGTGATCGGAGAAGGAGGCTACGGTATCGTGTACAGAGGAGTTTCGCCGGACGGCTCCGTCGTCGCCGTGAAGAGTCTTCTTAACAACAAGGGTCAGGCAGAGAAAGAGTTCAAGGTTGAAGTAGAGGCCATTGGAAAAGTAAGGCACAAGAACTTGGTGGGTCTGATAGGTTTTTGTGCAGAAGGAGCACAGAGGATGCTCGTGTTTGAATATATTGATAATGGCAACTTGGAGCAATGGCTACATGGTGATGTGGGGCCTGTTAGCCCTCTAACATGGGATATTAGGATGAAGATTGCTCTTGGGACAGCAAAAGGCTTGGCCTATTTGCATGAAGGTTTAGAACCTAAAGTCGTGCACCGTGATGTAAAATCCAGCAACATTCTTTTAGATAGAAAATGGAATGCAAAAGTGTCCGACTTTGGACTTGCAAAGCTCTTACAACCCGAAGCTACCTACGTAACTACTCGAGTAATGGGGACGTTCGGATATGTGTCCCCTGAGTATGCAAGTACAGGCATGCTAAACGAGGGAAGCGACGTATACAGTTTCGGGGTTCTACTTATGGAGATCATTACCGGTCGAAGCCCAATCGACTATTCCAGGCCCCCAGGAGAGATGAACTTGGTGGACTGGTTTAAAGGAATGGTGGCGAATCGACGAGGCGAAGAGGTTGTGGATCCATTGATTGAGATTCCACCCTCTCCAAGAGCTCTAAAGCGACTGTTGCTTGTTTGTCTACGCTGCATTGACTTGGATGCCAATAAAAGGCCAAAGATGGGGCAAATCGTTCACATGCTAGAGGCAGATGACTTTCCTTATCGTTCGGAGCTTCGATCGGTGCGAGACAAAGACAGCCAGCCTTCACGACTAGACGTACCGAGTAAACTTCCATCAAAGCATGCTGGTATAGATGACACGGAATCAAGAAAGAGATAA 1413 48.27 MAVSGSNSTEIHPVDESSSSSSTTSLSNLKIYAAIGVIVACVIAACALIFLCFRRNRDSRKHKMRVKHSSGLIPLVSKEIAEIKESDRTADCEKGEVVRVEKKMEIEFESGVGKKSQESDVSGGGRSDVSVEDQNLGWGRWYSLKELEMATDGFLEENVIGEGGYGIVYRGVSPDGSVVAVKSLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLIGFCAEGAQRMLVFEYIDNGNLEQWLHGDVGPVSPLTWDIRMKIALGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRKWNAKVSDFGLAKLLQPEATYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVANRRGEEVVDPLIEIPPSPRALKRLLLVCLRCIDLDANKRPKMGQIVHMLEADDFPYRSELRSVRDKDSQPSRLDVPSKLPSKHAGIDDTESRKR 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1113601 1117623 + Cp4.1LG04g00970.1 Cpe04g00123 467685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00123 470 Gene3D Phosphorylase Kinase; domain 1 125 229 - -
Cpe04g00123 470 CDD STKc_IRAK 160 426 - -
Cpe04g00123 470 MobiDBLite consensus disorder prediction 437 470 - -
Cpe04g00123 470 SUPERFAMILY Protein kinase-like (PK-like) 132 426 IPR011009 -
Cpe04g00123 470 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524
Cpe04g00123 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Cpe04g00123 470 Gene3D Transferase(Phosphotransferase) domain 1 230 439 - -
Cpe04g00123 470 ProSiteProfiles Protein kinase domain profile. 154 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00123 470 MobiDBLite consensus disorder prediction 1 23 - -
Cpe04g00123 470 PANTHER OS01G0323000 PROTEIN 17 442 - -
Cpe04g00123 470 PANTHER OS03G0227900 PROTEIN 17 442 - -
Cpe04g00123 470 Pfam Protein kinase domain 156 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00123 470 SMART serkin_6 154 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00123 Cpe15g00537 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00123 Cpe-Chr4:1113601 Cpe11g00144 Cpe-Chr11:786439 1.48E-170 dispersed
Cpe10g00173 Cpe-Chr10:1029944 Cpe04g00123 Cpe-Chr4:1113601 1.47E-47 transposed
Cpe15g00537 Cpe-Chr15:6249056 Cpe04g00123 Cpe-Chr4:1113601 1.03E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62328 PF00069 Pkinase 5.40E-46 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00123 - - cpep:111792269 902.508