Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00124 ATGTCTGTTTCCGAGCTTAAGGAGCGGCATGTGGCGGCCATTGAGATGGTCAACTCTCTCAGAGAACGCTTGAAAGAGAAGAGGCGTTCGTTGCTCGACACTGACGTAGCTGCGTTTGCGAGGTCTCAGGGGAAGCGTCCCGTCTGTTTCGGAGCTACGGATCTCGTCTGCTGTAGGACTTTGCAGGGTCATACTGGAAAGGTGTACTCGTTGGATTGGACTTCGGAGAGGAATCGAATTGTTAGTGCATCTAAAGATGGGCGTTTAATAGTGTGGAATGCTCTAACAAGCCAGAAGACTCATGCCATAAAGCTACCTTGTCCATGGGTCATGACTTGCGCTTTCTCGCCTTCTGGTCAATCTGTAGCGGGTGGTGGTCTGGACAGTGTCTGTTCTATCTTCAACCTCAACTCTCCAAATGACAGGGATGGCAATCTGCCAGTGTCTAGAACTCTTAGCGGGCATAAAGGGTATGTTTCCTGTTGTCAATATGTTCCAGATGATGATAATCACCTCATTACTGGTTCTGGGGATCAGACTTGTGTCTTGTGGGATATTACTACTGGACTTCGAACGTCTGTTTTCGGAGGCGAATTTCAATCCGGGCATACAGCAGATGTATCAAGTGTATCTATTAGCGGATCCAACACATTTATTTCTGGTTCTTGTGATGCAACTGCTCGCCTCTGGGACACTCGGGTAGCTAGTCGAGCAGTGCAGACATTCCACGGACACGACGGAGATGTTAATACAGTAAAGTTCTTTCCGGATGGTAACCGGTTTGGAACTGGTTCTGATGATGGAACTTGCAGACTATATGATATCAGAACTGGGCATGTTCTCCAAGTTTACCATCAGCTGCACAGCGATGATACCAACCCACATGTAACCTCCATTGCATTCTCTATATCTGGAAGGCTTTTATTTGCTGGATACAAAAATGGCGATTGCTATGTGTGGGACACTTTACTTGCACAGATTTGGGCTTTTGGAGGTCAGAGGAAGGTAAATTAA 1014 46.94 MSVSELKERHVAAIEMVNSLRERLKEKRRSLLDTDVAAFARSQGKRPVCFGATDLVCCRTLQGHTGKVYSLDWTSERNRIVSASKDGRLIVWNALTSQKTHAIKLPCPWVMTCAFSPSGQSVAGGGLDSVCSIFNLNSPNDRDGNLPVSRTLSGHKGYVSCCQYVPDDDNHLITGSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVSSVSISGSNTFISGSCDATARLWDTRVASRAVQTFHGHDGDVNTVKFFPDGNRFGTGSDDGTCRLYDIRTGHVLQVYHQLHSDDTNPHVTSIAFSISGRLLFAGYKNGDCYVWDTLLAQIWAFGGQRKVN 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1121801 1125155 + Cp4.1LG04g00850.1 Cpe04g00124 467686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00124 337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 242 278 - -
Cpe04g00124 337 CDD WD40 57 329 - -
Cpe04g00124 337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 233 - -
Cpe04g00124 337 ProSiteProfiles Trp-Asp (WD) repeats profile. 242 283 IPR001680 GO:0005515
Cpe04g00124 337 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 1 327 IPR016346 GO:0007165
Cpe04g00124 337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 93 - -
Cpe04g00124 337 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN, BETA SUBUNIT-RELATED 1 327 - -
Cpe04g00124 337 PRINTS Beta G protein (transducin) signature 99 114 IPR001632 -
Cpe04g00124 337 PRINTS Beta G protein (transducin) signature 80 94 IPR001632 -
Cpe04g00124 337 PRINTS Beta G protein (transducin) signature 117 134 IPR001632 -
Cpe04g00124 337 PRINTS Beta G protein (transducin) signature 61 77 IPR001632 -
Cpe04g00124 337 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Cpe04g00124 337 Pfam WD domain, G-beta repeat 239 274 IPR001680 GO:0005515
Cpe04g00124 337 Pfam WD domain, G-beta repeat 201 231 IPR001680 GO:0005515
Cpe04g00124 337 Pfam WD domain, G-beta repeat 150 185 IPR001680 GO:0005515
Cpe04g00124 337 Pfam WD domain, G-beta repeat 291 321 IPR001680 GO:0005515
Cpe04g00124 337 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 194 IPR001680 GO:0005515
Cpe04g00124 337 PRINTS G protein beta WD-40 repeat signature 218 232 IPR020472 -
Cpe04g00124 337 PRINTS G protein beta WD-40 repeat signature 172 186 IPR020472 -
Cpe04g00124 337 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Cpe04g00124 337 PIRSF GNBP_B 1 330 - -
Cpe04g00124 337 SUPERFAMILY WD40 repeat-like 54 323 IPR036322 GO:0005515
Cpe04g00124 337 Coils Coil 3 23 - -
Cpe04g00124 337 Gene3D - 11 333 IPR015943 GO:0005515
Cpe04g00124 337 SMART WD40_4 145 185 IPR001680 GO:0005515
Cpe04g00124 337 SMART WD40_4 96 135 IPR001680 GO:0005515
Cpe04g00124 337 SMART WD40_4 192 231 IPR001680 GO:0005515
Cpe04g00124 337 SMART WD40_4 277 321 IPR001680 GO:0005515
Cpe04g00124 337 SMART WD40_4 54 93 IPR001680 GO:0005515
Cpe04g00124 337 SMART WD40_4 235 274 IPR001680 GO:0005515
Cpe04g00124 337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 189 - -
Cpe04g00124 337 ProSitePatterns Trp-Asp (WD) repeats signature. 172 186 IPR019775 -
Cpe04g00124 337 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 240 IPR001680 GO:0005515
Cpe04g00124 337 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 102 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00124 K04536 GNB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 - csv:101218729 603.594
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00124 Cpe15g00535 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00124 Cpe-Chr4:1121801 Cpe10g00519 Cpe-Chr10:3042569 2.22E-08 dispersed
Cpe15g00535 Cpe-Chr15:6235703 Cpe04g00124 Cpe-Chr4:1121801 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g584 Blo02g00801 . . Bda08g00926 . . . . Cmo19g00675 . . . . . Sed05g2321 Cpe04g00124 Cpe15g00535 Bhi05g01225 Tan02g0806 Cmetu01g2025 . Hepe02g0513 . . Cla02g00527 Cam02g0545 Cec02g0546 Cco02g0552 Clacu02g0546 Cmu02g0541 Cre02g0872 Cone12ag1148 Cone8ag1196 . . . . . Cme01g01428 Blo04g00509 . . Bda14g00550 Bpe15g00870 . Bma03g00548 . . . . . Cma19g00661 . Car19g00504 . . . . . . . . . . . . . . . . Lsi11g01098 . Chy01g00793 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007608 3 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00124 Cpe_Chr04 FPKM 25.652779 25.458952 28.747118 32.48027 33.735756 24.426779 33.001953 39.108711 40.995872 47.378738