Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00126 ATGGGGGTTGGGAAGACCTCTTTGATGAACCAATATGTGAATAAGAAGTTTAGTAATCAATACAAGGCCACTATTGGAGCTGATTTCTTGACTAAAGAGGTGCAATTCGAAGATAGACTTTTCACTTTGCAGATATGGGATACAGCAGGCCAGGAACGGTTCCAAAGTCTTGGTGTTGCTTTTTACCGAGGTGCTGATTGCTGCGTTCTGGTGTATGATGTCAATTCAATGAAATCATTTGACAACCTTAACAACTGGCGGGAAGAATTCCTTATACAGGCGAGCCCTTCAGACCCGGAAAATTTTCCCTTCGTTGTTTTAGGAAATAAAGTCGACGTTGATGGTGGAAACAGTAGAGTTGTCTCAGAGAAAAAGGCACGAGCTTGGTGCGCGTCGAAAGGAAATATTCCATACTTTGAAACGTCTGCCAAAGAAGGCATTAACGTAGAAGAAGCTTTCGAATGCATTGCGAAAAATGCCCTCAAGAGTGGGGAAGAGGAAGAGATGGTTGGGAAGACCTCTTTGATGAACCAATATGTGAATAAGAAGTTTAGTAATCAATACAAGGCCACTATTGGAGCTGATTTCTTGACTAAAGAGGTGCAATTCGAAGATAGACTTTTCACTTTGCAGATATGGGATACAGCAGGCCAGGAACGGTTCCAAAGTCTTGGTGTTGCTTTTTACCGAGGTGCTGATTGCTGCGTTCTGGTGTATGATGTCAATTCAATGAAATCATTTGACAACCTTAACAACTGGCGGGAAGAATTCCTTATACAGGCGAGCCCTTCAGACCCGGAAAATTTTCCCTTCGTTGTTTTAGGAAATAAAGTCGACGTTGATGGTGGAAACAGTAGAGTTGTCTCAGAGAAAAAGGCACGAGCTTGGTGCGCGTCGAAAGGAAATATTCCATACTTTGAAACGTCTGCCAAAGAAGGCATTAACGTAGAAGAAGCTTTCGAATGCATTGCGAAAAATGCCCTCAAGAGTGGGGAAGAGGAAGAGATATACTTGCCCGACACGATCGATGTTGCAACCAACAATCAGCGAAGATCATCTGGATGCGACTGCTGA 1074 43.2 MGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFECIAKNALKSGEEEEMVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFECIAKNALKSGEEEEIYLPDTIDVATNNQRRSSGCDC 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1136910 1141597 + Cp4.1LG04g00860.1 Cpe04g00126 467688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00126 357 ProSiteProfiles small GTPase Ras family profile. 1 237 IPR001806 GO:0003924|GO:0005525
Cpe04g00126 357 SMART rho_sub_3 169 330 IPR001806 GO:0003924|GO:0005525
Cpe04g00126 357 SMART rho_sub_3 2 163 IPR001806 GO:0003924|GO:0005525
Cpe04g00126 357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 162 IPR027417 -
Cpe04g00126 357 ProSiteProfiles small GTPase Rab1 family profile. 1 199 - -
Cpe04g00126 357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 332 IPR027417 -
Cpe04g00126 357 SMART ras_sub_4 2 163 - -
Cpe04g00126 357 SMART ras_sub_4 170 330 - -
Cpe04g00126 357 SMART rab_sub_5 170 330 - -
Cpe04g00126 357 SMART rab_sub_5 1 163 - -
Cpe04g00126 357 Pfam Ras family 168 328 IPR001806 GO:0003924|GO:0005525
Cpe04g00126 357 Pfam Ras family 2 161 IPR001806 GO:0003924|GO:0005525
Cpe04g00126 357 PRINTS Transforming protein P21 ras signature 34 56 - -
Cpe04g00126 357 PRINTS Transforming protein P21 ras signature 100 113 - -
Cpe04g00126 357 PRINTS Transforming protein P21 ras signature 16 32 - -
Cpe04g00126 357 PRINTS Transforming protein P21 ras signature 138 160 - -
Cpe04g00126 357 PANTHER RAB FAMILY 2 169 - -
Cpe04g00126 357 PANTHER RAB FAMILY 170 357 - -
Cpe04g00126 357 TIGRFAM small_GTP: small GTP-binding protein domain 170 323 IPR005225 GO:0005525
Cpe04g00126 357 TIGRFAM small_GTP: small GTP-binding protein domain 2 156 IPR005225 GO:0005525
Cpe04g00126 357 CDD Rab7 2 166 - -
Cpe04g00126 357 PANTHER BNAA01G26470D PROTEIN 2 169 - -
Cpe04g00126 357 PANTHER BNAA01G26470D PROTEIN 170 357 - -
Cpe04g00126 357 SMART ran_sub_2 2 208 - -
Cpe04g00126 357 ProSiteProfiles small GTPase Rho family profile. 1 164 - -
Cpe04g00126 357 CDD Rab7 170 333 - -
Cpe04g00126 357 Gene3D - 1 167 IPR027417 -
Cpe04g00126 357 Gene3D - 168 340 IPR027417 -
Cpe04g00126 357 ProSiteProfiles small GTPase Rab1 family profile. 189 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00126 K07897 RAB7A; Ras-related protein Rab-7A - twl:119990327 380.563
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00126 Cpe-Chr4:1136910 Cpe17g00557 Cpe-Chr17:4591131 5.81E-112 dispersed
Cpe04g00126 Cpe-Chr4:1136910 Cpe04g00128 Cpe-Chr4:1141946 7.88E-48 proximal
Cpe06g00917 Cpe-Chr6:6470452 Cpe04g00126 Cpe-Chr4:1136910 5.13E-43 transposed
Cpe15g00533 Cpe-Chr15:6222067 Cpe04g00126 Cpe-Chr4:1136910 2.17E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g532 . . . Bda08g01303 . . . . . . . . . . . Cpe04g00126 . . . . . . . . . . . . . . . Cone12ag1126 Cone8ag1170 . . . Csa07g00819 . . . . . . . . . . . . . . . Car11g01070 . . . . . . . . . . . . . . . . . Lsi11g01052 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0055082 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00126 Cpe_Chr04 FPKM 22.514536 27.32922 32.867798 32.265808 18.108215 19.2367 19.411327 41.750908 38.903725 37.772568