Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00142 CACCAAGATCTTTACTTTCTCACCAACCAAACACTCAATGGTGGTGGTGGTGGCGGAGGGAGTGGGCGGCCGGCGAGGCGGCGGCGGGGGGGAGGGAGAACCCAAAAGAATAAAGAGGAAATAGAGAATCAAAGAATCACTCATATTACTGTGGAGAGGAACCGGAGAAAGCAAATGAATGAGTATCTCTCTGTTCTTCGATCATTGATGCCTCACTCTTACCTCCAAAGGGGCGACCAAGCCTCAATCATAGGCGGAGCCATCGACTTTGTGAAGCAGCTTGAGCACCAAGTACATTTGCTTACCAGCGCTCAAACATATGTAAACCCCTGTTTTCCTCCTCAAAATGCACCAATCTCTCATTTCTTTACCTGCCCTCACCTCTCCTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCATGTCTTCCAACCAGATTCACTCCCCCATTGCCCACGTCCATGTCTCCATGGCTGACTCCCATGCAAACCTCAAGATTAGGTGTACAAAGTTCCCTAAACAGCTTCTTAAGATCGTCTCTGCTTTGCATTCCTTGCGCCTCTCTGTTCTTCATCTCAATCTCTCCACTGCCCACCAAACTGTGCTCTATTCATTCAGTCTCAAGGTTGAGGAAGATTGTGGGCTCTCTTCGGAGGATGAAATTGCTAGAGCTGTGTATCAGTTGCTTTGCAGAATTCAAGAAGAGGCCTTCTCCGTTTGA 768 50.39 HQDLYFLTNQTLNGGGGGGGSGRPARRRRGGGRTQKNKEEIENQRITHITVERNRRKQMNEYLSVLRSLMPHSYLQRGDQASIIGGAIDFVKQLEHQVHLLTSAQTYVNPCFPPQNAPISHFFTCPHLSSAAAAAAAAAASSSSSSSSSSSSSSSPMSSNQIHSPIAHVHVSMADSHANLKIRCTKFPKQLLKIVSALHSLRLSVLHLNLSTAHQTVLYSFSLKVEEDCGLSSEDEIARAVYQLLCRIQEEAFSV 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1352534 1354565 + Cp4.1LG04g00700.1 Cpe04g00142 467704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00142 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 116 IPR036638 GO:0046983
Cpe04g00142 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 94 IPR011598 GO:0046983
Cpe04g00142 255 MobiDBLite consensus disorder prediction 9 39 - -
Cpe04g00142 255 Gene3D - 34 107 IPR036638 GO:0046983
Cpe04g00142 255 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 25 253 - -
Cpe04g00142 255 PANTHER MAX DIMERIZATION, MAD 25 253 - -
Cpe04g00142 255 SMART finulus 49 100 IPR011598 GO:0046983
Cpe04g00142 255 Pfam Helix-loop-helix DNA-binding domain 44 95 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00142 Cpe11g00947 CCT
Cpe04g00142 Cpe07g00915 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00142 Cpe-Chr4:1352534 Cpe07g00192 Cpe-Chr7:1197560 4.70E-71 dispersed
Cpe04g00142 Cpe-Chr4:1352534 Cpe11g00947 Cpe-Chr11:8017880 8.26E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49320 PF00010 HLH 5.20E-10 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00142 - - cpep:111792889 429.098