Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00147 ATGACAATTGGTCTTCAAGATCTTGCTCAATTGGGGTCTCTCAAAAAGACCTTGATGGATCAGCAAGGGCATGGCCAGCCTCAATCCATGGGAGCGGTTGGCAGTGGTGGTCAGATAGCATATGGCAGTAACTTGTACCATCCCGGCCAAATAACTGTAGGCTCGACTTCTGGATCTGTTGTTACATCGGTTGGAGGTATTCAGTCTACGAGTCAACCTGGTGGAGCGCAGCTTGGTCAACATCAACTTGCTTATCAGCATATCCACCAGCAGCAGCAACAACAGCTTCAACAACAGCTCCAGACTTTCTGGGCTAATCAGTACCAAGAGATTGAGAAGGTAACGGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGACGAGGACGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTTGAATTGACTTTACGCTCTTGGAATCATACTGAAGAGAACAAGCGCAGAACGCTTCAAAAGAATGATATTGCTGCAGCTATCACCAGAACTGACATTTTCGATTTTCTGGTTGATATCGTGCCTAGGGAGGATCTGAAAGACGAAGTACTCACCTCAATTCCAAGAGGATCGATAACAGTTGGAGGACCTGGAGATGCACTTCCTTACTGCTATATGCCGTCTCAGCATGCACCTCAGGTCGGAGCACCCGGAATGATTATGGGCAAGCCTGTGATGGACCCGGCTATATATGCTCAACAATCACACCCTTACATGCCTCCACAAATGTGGCAACACACACAAGATCAAGCCCCTCCTGATCAATACAAAAGACTTTTAAACGAAAAACTAGAGTACAGAATTGCTACCATTGTTCCTGTTGAGATGACAGAAGGAAGGAGGAATCTAAATAGGGAAATCCCGACGTGTGGATCCGTGATCGGCGGGAAGCGGAACAAATGTGTCATTTTTCCAGTCAAATCAAGCATGGTTGCTGAGTCTATGGACAGAAGTAACAAGAACTGGATTGTTCAGACAAAACCAGCATACGAAAGCGACTTAATTGTTCGAGTTGGGGATTTCAGCTTTCACTTGCACAAGCTCCCAATGGTAGCAAGAAGCAAATACCTGAATAGAATGATAATCCAAAACAGTAGCCATGAAGTGCAAAAGAACAACAGTGTGAGTACCATAGAACTTGACAATCTTCCAGGTGGGGCTATGGCTTTTGAGTTAGTGATGAAATTCTGCTATGGATGGAAGGTTGATTTAACTGCTAAAAATGTTGCTCCTCTTTACTGTGCTGCACATTTCCTAGAAATGACTGATGATCTTACACAAGGGAATTTAACTTCCAAAGCAGAAGCCTTCATGAGCTTTGTAATATCATCATCATGGAATGATACATTCAAAGTTCTCAAAAGTTGTGAATCCATTTCTCGATGCGCCAATCGGCTTCACATCCCGAAACGTTGTTCTGAAGCAATTGCTCTTAAGGCTTGTATGAATCCAGAGGCGTTCTGTAACAATGACTATAATGTTGATAATGTAAAGCTCGAAGTTGTCGCCGACAACTGGTGGTTTGCGGATGTTTCAGTTCTTAGGATTGATCATTTCATTGAAGTGATTGAATCGGGTAAACGAAGAGGAATGAGGTCCGAGGTTATAGGATCTTGTATAGCTCATTGGACAATGAGATGGTTTTCTTCTGCAATGAACGGACTCGAGAATTCGACGTTGCAGCATCTCACCAAGTTGAGATCAGTTACGGTTGAAAGTTTGATTCGGATACTTCCGTTCGAGGAAAACTCGGTTACCTCTAGTTTTCTGCTTCATATTTTGAAGCTGGGATCTGTAATGAAGATTGACTCTGAATTGTTAACTATACTAGAAAGTAGATTGGCCATGATGTTGGAAAAATGTGACACTTCGGATTTACTTGTCAAGAACTACGGAGAAGACGATAGTGTTTACGACGTTGCCATTGTTACTCGGGTGGTGAAGTCTTATGCAGCTCACATATCAGATAACTCTCAATCCAATCTACTAGTTGTTGGTCGATTGGTGGACGATTATCTTATGCTTGTTGCACGAGATCAAAACCTCAGGGCGGATTGTTTCCAAGTCCTTGTCGAGGCATTGCCGCAAAACGCTCGGGTTTGTTTCGACAATATGTATCGAGCAATTGATATGTACCTGAAGGCACATCCTGAGTTAACAGAAGAAGAAAGGACATGTCTATGTAGCTCATTGAAATACCATAAACTATCACAAGCAGCAAGGGAACACATAATGAGAAACGATCGGTTACCATTGAAATACACGACGAGTTTTATTCTTTTGGAACAAGTCATGACGAGACCTCGAGCCGAATTTGGAATGAGTAATGGTCAAACGAAAGGCCGAGTTGTGATGGGTGAAAGTAGGGGAGGGTCGAGTTGGATGATGAGTTCACAAAAGGAGATAAGTATGATGAAAAGGGAGGTTGAGACAATGAAAGGGCAGCTCAATGATATGCAGATGTGCAAGACAAAGCTTGAAGGTCAAGTAAAGAAAGGTTTCAATTACAAGAAAAACTTTGCTAGTGTGCGGAAAATTGTCTGTTTAGGGTTCAATAGTGCTAAGATGAACATTGGCTTTGCTTCATTCTCAACTTGA 2667 42.82 MTIGLQDLAQLGSLKKTLMDQQGHGQPQSMGAVGSGGQIAYGSNLYHPGQITVGSTSGSVVTSVGGIQSTSQPGGAQLGQHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSITVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPAIYAQQSHPYMPPQMWQHTQDQAPPDQYKRLLNEKLEYRIATIVPVEMTEGRRNLNREIPTCGSVIGGKRNKCVIFPVKSSMVAESMDRSNKNWIVQTKPAYESDLIVRVGDFSFHLHKLPMVARSKYLNRMIIQNSSHEVQKNNSVSTIELDNLPGGAMAFELVMKFCYGWKVDLTAKNVAPLYCAAHFLEMTDDLTQGNLTSKAEAFMSFVISSSWNDTFKVLKSCESISRCANRLHIPKRCSEAIALKACMNPEAFCNNDYNVDNVKLEVVADNWWFADVSVLRIDHFIEVIESGKRRGMRSEVIGSCIAHWTMRWFSSAMNGLENSTLQHLTKLRSVTVESLIRILPFEENSVTSSFLLHILKLGSVMKIDSELLTILESRLAMMLEKCDTSDLLVKNYGEDDSVYDVAIVTRVVKSYAAHISDNSQSNLLVVGRLVDDYLMLVARDQNLRADCFQVLVEALPQNARVCFDNMYRAIDMYLKAHPELTEEERTCLCSSLKYHKLSQAAREHIMRNDRLPLKYTTSFILLEQVMTRPRAEFGMSNGQTKGRVVMGESRGGSSWMMSSQKEISMMKREVETMKGQLNDMQMCKTKLEGQVKKGFNYKKNFASVRKIVCLGFNSAKMNIGFASFST 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1422317 1429109 + Cp4.1LG04g00630.1 Cpe04g00147 467709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00147 888 ProSiteProfiles NPH3 domain profile. 528 788 IPR027356 -
Cpe04g00147 888 PANTHER OS12G0117600 PROTEIN 332 855 IPR043454 -
Cpe04g00147 888 ProSiteProfiles BTB domain profile. 355 429 IPR000210 GO:0005515
Cpe04g00147 888 Gene3D Histone, subunit A 83 199 IPR009072 GO:0046982
Cpe04g00147 888 Pfam NPH3 family 528 763 IPR027356 -
Cpe04g00147 888 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 121 184 IPR003958 -
Cpe04g00147 888 Pfam BTB/POZ domain 355 446 IPR000210 GO:0005515
Cpe04g00147 888 SUPERFAMILY POZ domain 354 446 IPR011333 -
Cpe04g00147 888 SUPERFAMILY Histone-fold 90 193 IPR009072 GO:0046982
Cpe04g00147 888 SMART BTB_4 355 459 IPR000210 GO:0005515
Cpe04g00147 888 PANTHER COLEOPTILE PHOTOTROPISM PROTEIN 1-LIKE ISOFORM X1 332 855 - -
Cpe04g00147 888 Gene3D Potassium Channel Kv1.1; Chain A 347 494 IPR011333 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00147 Cpe-Chr4:1422317 Cpe01g00357 Cpe-Chr1:2052545 1.13E-117 dispersed
Cpe04g00402 Cpe-Chr4:4668502 Cpe04g00147 Cpe-Chr4:1422317 8.93E-82 dispersed
Cpe04g01618 Cpe-Chr4:12557973 Cpe04g00147 Cpe-Chr4:1422317 3.63E-63 dispersed
Cpe15g00258 Cpe-Chr15:2468536 Cpe04g00147 Cpe-Chr4:1422317 4.23E-77 dispersed
Cpe18g00908 Cpe-Chr18:8122394 Cpe04g00147 Cpe-Chr4:1422317 1.00E-63 dispersed
Cpe18g00070 Cpe-Chr18:1728604 Cpe04g00147 Cpe-Chr4:1422317 5.25E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49321 PF03000 NPH3 2.50E-66 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00147 - - mcha:111023868 976.081