Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00158 ATGGGTTGTGTTGTGAAGTGCGTTTTCATGATTGTAATTGCTAATTCACTGTTGAGTGCAGCAGAGAGCTTCAATGTAGAAGAGCTTGAGAGAGTTTCAGGGGAAGATGAGAGTGGAGGAAATAGACCTTTAATTCTGGAGAGATTCAGAGCTCTACTTGGACTCAATCAAAGCCCATCAGATCTGTCGCCTTCGCCGTCTCCATCACCGGCCGAGGCAGCTCGTCCAGTGCACACTCATAAACATTCCCGCCCTCATCAGCTTCGCTTGCACAAGAGCCGACCAGTCTACAAATCTAAAAGACATGAAGATGCAAGAAAAAGAGTCAGAAAAATTCTTGTTGCAGTTCTTGTGTCTACAGGAATCACCATTTTGATATGCACTATTGTTGCCTTCTGGGTCTGCAAGAGGTTTAAAATTCGAACAGAGGAACCCGCCGAGAAGCTTTCTATAACGAGTGAAACAGGAGAGAAGACAGCCAAACAAAAATCTGGGTTTGATCTTTTCGATCTCAGTACGCATGGAATGGATGTTGAAGAACACAGTGTTTCCTCATCTGGGGAGAGAGTTACTCCTGTTCAATGTTGTTCTTCTGATGAGGAGGAATCATTCCATTCTTGTGGGGATCCCAATTTGTCGAATGTTCGTCTTTCAAATGCTTCTGAATCTTCTTCAGCTAATGTGAAAACAAATTCTAATTCTTCAGAACCTAACAAACCATTAACTTCTGACCAGTTTCATCTTACCCCTTCTCCTTGTAACTCAGAAACCAAGGATGTCCCATCTTTAGCTCCGCCTCCACCACCGCCGCCGCCGCCGCCGCTGCGACCATCTCCGGTCACTTATCGCAGTTCATTTACCCTCTCTTCACCCTTTTCAACTGGATCCACCTCCTCTTCTGCATTGCTAAGATCATCATCTCCTGCAATGTCAGATTCTTCTTCGTTATCTCAAATACCATGGAATGATCTGCCATCACCTCCAAACATTGCAAAACCTTCACTACCATCATCTACTATTCCTCCACCCCCTTGTCCACCGCCAAGTTTGAAAGAAAACGCTTATTCTTTCAAAGCCCCACCTCCTCCTCCTCCTTCCAAACTCCCTCAATTCATGGCATTTGGAAAAGAGGGAAATCTGCTGCCGAAACTTAAGCCTCTCCACTGGGACAAAGTAAGAGCTGCACCAGATCGATCAATGGTGTGGGACAAGCTAAGATGGAGTTCATTTGAGCTAGATGAAGAAATGATTGAGTCACTATTCGGCTACAACCAACATGGTTCAATGAAGAATGGTGATGCTAGCAACAAAACCCCTTCTCCAAGCAAGCATATACTAGAGGCTAAGAGACTCCAGAACCTAACCATACTCTTAAAAGCCCTGAATCTCTCCGCAGAACATGCCTGTGAAGCCATAGAACAAGGGACTGGGTTGCGTTTAAGACAACTTGAAGCACTGGTAAAGATGGTACCAACACAGGAAGAACAAGCCAAATTGTTAAGCTATGAAGGAGACATCGGTGAATATGGGTGCACAGAGAAGTTTGTGATAGCAATTCTGAGAATACCATTCGCCTTCCAACGAGTGGAAGCCATGCTCTACAGAGAAACTTTTGAAGATGAAGTGAATCATCTCCGGAATTCGTTTTCAATGCTAGAGGAGGCTTGCAAGGAGCTAAGATCCAGCAGGCTTTTCCTGAAACTACTTGAAGCCGTGCTCAAAACAGGGAACCGAATGAACGTGGGAACAAGCAGAGGAGGCGCAAAAGCATTCAAACTAGACGCACTCCTAAGACTCTCCGACGTCAAAGGAACCGACGGAAAAACCTCCCTCCTCCATTTCGTGGTCCAAGAAATAATCCGATCAGAAGGAATCCGAGTCTCCGGTAGCATAATGGGGAAAATCAGCCAAAAGAACAAATCGAGAACAATCGAAGAAAGAGAAAACGATTACCGAAGAATGGGATTAGATCTGGTCTCCGGCCTGAGCACCGAATTACACAACGTTAAGCGAGCGGCAACGACCGATCTGAAAGTTCTGGCGAGCGCCACAGCGAATCTGAACGAGGGAATGGCGAAATTGCAAGAACTGGTGTTGAAGGGACTGTGTGGAGATGAACGGAGTGGGAACTTCGTGAGCGCAATGAAAGGGTTCTTGAGCTACGTGAAGAAGACGATGGAGTTGGTGAGGAAGGACGAGGAAGGGGTGATGGGAAGCGTGAGAGAGATCACAGAGTACTTCCATGGAAATGTGAGCAAAGAAGAGACGAATCCGCTGAGGATTTTTGTGATTGTGAGAGATTTTCTGGGAATGTTGGACAATGTGTGTAAAAGCTTCAAGATCGGAAGTTGA 2352 45.75 MGCVVKCVFMIVIANSLLSAAESFNVEELERVSGEDESGGNRPLILERFRALLGLNQSPSDLSPSPSPSPAEAARPVHTHKHSRPHQLRLHKSRPVYKSKRHEDARKRVRKILVAVLVSTGITILICTIVAFWVCKRFKIRTEEPAEKLSITSETGEKTAKQKSGFDLFDLSTHGMDVEEHSVSSSGERVTPVQCCSSDEEESFHSCGDPNLSNVRLSNASESSSANVKTNSNSSEPNKPLTSDQFHLTPSPCNSETKDVPSLAPPPPPPPPPPLRPSPVTYRSSFTLSSPFSTGSTSSSALLRSSSPAMSDSSSLSQIPWNDLPSPPNIAKPSLPSSTIPPPPCPPPSLKENAYSFKAPPPPPPSKLPQFMAFGKEGNLLPKLKPLHWDKVRAAPDRSMVWDKLRWSSFELDEEMIESLFGYNQHGSMKNGDASNKTPSPSKHILEAKRLQNLTILLKALNLSAEHACEAIEQGTGLRLRQLEALVKMVPTQEEQAKLLSYEGDIGEYGCTEKFVIAILRIPFAFQRVEAMLYRETFEDEVNHLRNSFSMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGTSRGGAKAFKLDALLRLSDVKGTDGKTSLLHFVVQEIIRSEGIRVSGSIMGKISQKNKSRTIEERENDYRRMGLDLVSGLSTELHNVKRAATTDLKVLASATANLNEGMAKLQELVLKGLCGDERSGNFVSAMKGFLSYVKKTMELVRKDEEGVMGSVREITEYFHGNVSKEETNPLRIFVIVRDFLGMLDNVCKSFKIGS 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1521779 1526031 - Cp4.1LG04g00490.1 Cpe04g00158 467720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00158 783 PANTHER FORMIN-RELATED 264 780 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cpe04g00158 783 MobiDBLite consensus disorder prediction 326 350 - -
Cpe04g00158 783 MobiDBLite consensus disorder prediction 58 102 - -
Cpe04g00158 783 SUPERFAMILY Formin homology 2 domain (FH2 domain) 387 777 - -
Cpe04g00158 783 Pfam Formin Homology 2 Domain 382 772 IPR015425 -
Cpe04g00158 783 MobiDBLite consensus disorder prediction 261 279 - -
Cpe04g00158 783 MobiDBLite consensus disorder prediction 280 324 - -
Cpe04g00158 783 ProSiteProfiles Formin homology-2 (FH2) domain profile. 374 783 IPR015425 -
Cpe04g00158 783 Gene3D Formin, FH2 domain 379 780 IPR042201 -
Cpe04g00158 783 SMART it6_source 374 781 IPR015425 -
Cpe04g00158 783 MobiDBLite consensus disorder prediction 215 258 - -
Cpe04g00158 783 Coils Coil 535 555 - -
Cpe04g00158 783 MobiDBLite consensus disorder prediction 79 96 - -
Cpe04g00158 783 PANTHER FORMIN-LIKE PROTEIN 264 780 - -
Cpe04g00158 783 MobiDBLite consensus disorder prediction 215 368 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00158 - - - cmos:111441137 1404.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00158 Cpe-Chr4:1521779 Cpe05g01150 Cpe-Chr5:7799988 1.22E-123 dispersed
Cpe18g00055 Cpe-Chr18:1095180 Cpe04g00158 Cpe-Chr4:1521779 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g193 . . . . . . . . Cmo10g01196 Cmo11g01174 . . . . Sed04g0465 . . Bhi02g02104 Tan09g0197 Cmetu02g0328 . Hepe09g1587 . . . . . . . . . . . Cone5ag0041 . Lsi06g00120 . Chy08g01021 . . . . . Bpe05g00226 . . Bma05g00280 . . . Cma10g01113 Cma11g01134 Car10g00964 Car11g00952 Cpe04g00158 . . . . . . . . Cla03g01635 Cam03g1721 Cec03g1767 Cco03g1771 Clacu03g1743 Cmu03g2293 Cre03g1973 . Csa01g02771 . Cme02g00090
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe15g00159 . 183 988 FH2 protein (formin) Gene Family AT3G25500 52.8 1.5e-190 664.1
Cpe01g01670 . 446 923 FH2 protein (formin) Gene Family AT3G25500 65.3 3.1e-164 576.6
Cpe05g01150 . 460 882 FH2 protein (formin) Gene Family AT3G25500 62.1 1.2e-139 495.0
Cpe18g00055 . 488 889 FH2 protein (formin) Gene Family AT3G25500 50.7 2.0e-102 371.3
Cpe04g00158 . 382 778 FH2 protein (formin) Gene Family AT3G25500 51.6 1.3e-101 368.6
Cpe05g00138 . 621 1069 FH2 protein (formin) Gene Family AT2G43800 60.4 4.9e-142 502.7
Cpe15g00159 . 552 1005 FH2 protein (formin) Gene Family AT2G43800 59.2 2.3e-139 493.8
Cpe05g01150 . 460 898 FH2 protein (formin) Gene Family AT2G43800 54.6 2.7e-124 443.7
Cpe05g01457 CST 463 630 FH2 protein (formin) Gene Family AT4G15200 61.8 3.6e-48 189.9
Cpe02g00746 CST 511 649 FH2 protein (formin) Gene Family AT4G15200 67.1 4.4e-46 183.0
Cpe06g00740 CST 452 590 FH2 protein (formin) Gene Family AT4G15200 65.2 1.1e-44 178.3
Cpe02g00746 CST 7 948 FH2 protein (formin) Gene Family AT5G54650 50.5 8.0e-169 591.7
Cpe06g00740 CST 452 897 FH2 protein (formin) Gene Family AT5G54650 66.5 2.6e-167 586.6
Cpe16g00458 CST 412 869 FH2 protein (formin) Gene Family AT5G54650 58.3 1.6e-140 497.7
Cpe05g01457 CST 468 865 FH2 protein (formin) Gene Family AT5G54650 60.1 1.2e-127 454.9
Cpe05g00138 . 624 1025 FH2 protein (formin) Gene Family AT5G54650 50.6 1.2e-103 375.2
Cpe05g01150 . 29 901 FH2 protein (formin) Gene Family AT5G67470 56.3 3.5e-225 778.9
Cpe15g00159 . 544 1005 FH2 protein (formin) Gene Family AT5G67470 59.2 2.2e-134 477.2
Cpe01g01670 . 466 919 FH2 protein (formin) Gene Family AT5G67470 59.8 1.9e-133 474.2
Cpe05g00138 . 604 1067 FH2 protein (formin) Gene Family AT5G67470 57.7 2.3e-131 467.2
Cpe04g00158 . 382 780 FH2 protein (formin) Gene Family AT5G67470 51.2 1.7e-102 371.3
Cpe01g00268 . 356 832 FH2 protein (formin) Gene Family AT1G59910 51.1 5.6e-125 446.0
Cpe15g00159 . 584 964 FH2 protein (formin) Gene Family AT5G48360 52.7 1.4e-100 364.8
Cpe05g00138 . 645 1026 FH2 protein (formin) Gene Family AT5G48360 51.8 2.0e-99 360.9
Cpe05g01150 . 484 859 FH2 protein (formin) Gene Family AT5G48360 50.8 4.0e-92 336.7
Cpe04g00158 . 197 780 FH2 protein (formin) Gene Family AT3G05470 58.8 1.9e-159 560.5
Cpe02g00746 CST 509 923 FH2 protein (formin) Gene Family AT3G05470 50.4 2.3e-107 387.5
Cpe05g01150 . 464 858 FH2 protein (formin) Gene Family AT3G05470 51.1 1.8e-104 377.9
Cpe05g00142 . 1 1195 FH2 protein (formin) Gene Family AT1G31810 64.9 0.0e+00 1214.9
Cpe15g00167 . 1 1356 FH2 protein (formin) Gene Family AT1G31810 62.4 0.0e+00 1150.2
Cpe18g00780 CCT 1478 1799 FH2 protein (formin) Gene Family AT5G07650 75.5 1.7e-130 464.2
Cpe04g01480 CCT,CST 1354 1682 FH2 protein (formin) Gene Family AT5G07650 71.7 4.8e-125 446.0
Cpe02g01046 . 986 1278 FH2 protein (formin) Gene Family AT5G07650 70.0 7.9e-112 402.1
Cpe05g00142 . 861 1192 FH2 protein (formin) Gene Family AT5G07650 60.5 7.4e-110 395.6
Cpe02g00327 CCT 1023 1354 FH2 protein (formin) Gene Family AT5G07650 61.9 1.2e-107 388.3
Cpe18g00562 . 871 1190 FH2 protein (formin) Gene Family AT5G07650 61.1 1.3e-106 384.8
Cpe04g01248 . 911 1230 FH2 protein (formin) Gene Family AT5G07650 61.7 2.9e-106 383.6
Cpe20g00055 CCT,CST 842 1173 FH2 protein (formin) Gene Family AT5G07650 61.7 2.1e-104 377.5
Cpe06g00297 CCT 1000 1305 FH2 protein (formin) Gene Family AT5G07650 61.6 2.2e-101 367.5
Cpe15g00167 . 1036 1353 FH2 protein (formin) Gene Family AT5G07650 56.6 3.8e-98 356.7
Cpe18g00780 CCT 1403 1792 FH2 protein (formin) Gene Family AT5G07770 68.0 5.1e-140 495.4
Cpe04g01480 CCT,CST 1234 1672 FH2 protein (formin) Gene Family AT5G07770 60.2 9.7e-131 464.5
Cpe02g01046 . 909 1278 FH2 protein (formin) Gene Family AT5G07770 63.1 3.1e-121 433.0
Cpe05g00142 . 797 1186 FH2 protein (formin) Gene Family AT5G07770 56.3 2.7e-117 419.9
Cpe02g00327 CCT 961 1346 FH2 protein (formin) Gene Family AT5G07770 58.3 1.3e-114 411.0
Cpe20g00055 CCT,CST 751 1173 FH2 protein (formin) Gene Family AT5G07770 55.5 3.7e-114 409.5
Cpe04g01248 . 834 1222 FH2 protein (formin) Gene Family AT5G07770 56.4 1.1e-113 407.9
Cpe06g00297 CCT 931 1304 FH2 protein (formin) Gene Family AT5G07770 57.9 2.0e-112 403.7
Cpe18g00562 . 784 1182 FH2 protein (formin) Gene Family AT5G07770 54.8 1.3e-111 401.0
Cpe15g00167 . 972 1347 FH2 protein (formin) Gene Family AT5G07770 53.5 3.3e-107 386.3
Cpe02g00327 CCT 936 1356 FH2 protein (formin) Gene Family AT3G32400 71.3 9.5e-164 573.9
Cpe06g00297 CCT 905 1312 FH2 protein (formin) Gene Family AT3G32400 72.2 2.3e-162 569.3
Cpe04g01248 . 823 1231 FH2 protein (formin) Gene Family AT3G32400 66.7 1.1e-146 517.3
Cpe18g00780 CCT 1403 1799 FH2 protein (formin) Gene Family AT3G32400 66.0 2.7e-142 502.7
Cpe18g00562 . 769 1191 FH2 protein (formin) Gene Family AT3G32400 63.0 3.5e-142 502.3
Cpe05g00142 . 797 1191 FH2 protein (formin) Gene Family AT3G32400 65.7 8.7e-141 497.7
Cpe15g00167 . 972 1352 FH2 protein (formin) Gene Family AT3G32400 63.5 8.1e-131 464.5
Cpe04g01480 CCT,CST 1221 1682 FH2 protein (formin) Gene Family AT3G32400 55.9 3.1e-130 462.6
Cpe02g01046 . 880 1278 FH2 protein (formin) Gene Family AT3G32400 57.8 2.0e-121 433.3
Cpe20g00055 CCT,CST 736 1176 FH2 protein (formin) Gene Family AT3G32400 51.8 4.5e-113 405.6
Cpe06g00297 CCT 15 1312 FH2 protein (formin) Gene Family AT2G25050 54.0 0.0e+00 1141.3
Cpe02g00327 CCT 1 1356 FH2 protein (formin) Gene Family AT2G25050 51.7 0.0e+00 1120.5
Cpe04g01248 . 1 1231 FH2 protein (formin) Gene Family AT2G25050 51.4 6.1e-294 1007.7
Cpe18g00562 . 1 1191 FH2 protein (formin) Gene Family AT2G25050 54.6 2.0e-292 1002.7
Cpe18g00780 CCT 1404 1799 FH2 protein (formin) Gene Family AT5G07780 62.7 2.6e-123 439.5
Cpe04g01480 CCT,CST 1235 1682 FH2 protein (formin) Gene Family AT5G07780 55.5 1.5e-115 413.7
Cpe05g00142 . 798 1187 FH2 protein (formin) Gene Family AT5G07780 52.5 1.1e-102 370.9
Cpe02g01046 . 910 1278 FH2 protein (formin) Gene Family AT5G07780 56.1 1.5e-102 370.5
Cpe02g00327 CCT 962 1347 FH2 protein (formin) Gene Family AT5G07780 53.1 3.1e-100 362.8
Cpe04g01248 . 841 1230 FH2 protein (formin) Gene Family AT5G07780 53.3 5.9e-99 358.6
Cpe20g00055 CCT,CST 766 1176 FH2 protein (formin) Gene Family AT5G07780 51.7 1.3e-98 357.5
Cpe06g00297 CCT 932 1305 FH2 protein (formin) Gene Family AT5G07780 52.8 1.2e-96 350.9
Cpe15g00167 . 973 1348 FH2 protein (formin) Gene Family AT5G07780 50.6 1.2e-96 350.9
Cpe18g00562 . 791 1182 FH2 protein (formin) Gene Family AT5G07780 51.2 1.2e-96 350.9
Cpe04g01480 CCT,CST 1 1688 FH2 protein (formin) Gene Family AT5G07740 57.0 0.0e+00 1098.2
Cpe18g00780 CCT 1 1808 FH2 protein (formin) Gene Family AT5G07740 56.5 2.1e-300 1029.6
Cpe18g00780 CCT 1477 1806 FH2 protein (formin) Gene Family AT5G07760 74.7 4.6e-129 459.5
Cpe04g01480 CCT,CST 1353 1687 FH2 protein (formin) Gene Family AT5G07760 70.3 1.2e-121 434.9
Cpe02g01046 . 985 1278 FH2 protein (formin) Gene Family AT5G07760 70.4 3.3e-111 400.2
Cpe05g00142 . 871 1192 FH2 protein (formin) Gene Family AT5G07760 61.9 4.5e-108 389.8
Cpe04g01248 . 910 1230 FH2 protein (formin) Gene Family AT5G07760 63.8 3.8e-107 386.7
Cpe18g00562 . 871 1189 FH2 protein (formin) Gene Family AT5G07760 62.5 1.4e-106 384.8
Cpe02g00327 CCT 1035 1354 FH2 protein (formin) Gene Family AT5G07760 63.7 5.5e-106 382.9
Cpe06g00297 CCT 1006 1320 FH2 protein (formin) Gene Family AT5G07760 61.1 9.0e-101 365.5
Cpe20g00055 CCT,CST 841 1176 FH2 protein (formin) Gene Family AT5G07760 59.6 2.9e-99 360.5
Cpe15g00167 . 1046 1353 FH2 protein (formin) Gene Family AT5G07760 57.6 5.1e-96 349.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006698 1 1 1 1 1 1 2 2 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00158 Cpe_Chr04 FPKM 5.781871 6.432411 8.821232 7.882862 8.922237 9.281618 8.764451 8.943266 8.741737 8.58149