Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00171 ATGGGGGCTAAATTTTCAAAGCCGAGTCAGGCGAAGGACTCGGCGAAGGTGGAAAACCTTAGTCTGCAACACCATCTCATCAATTATCTATCAAAAAGCTTTTACATCCGTAACTTGGTATCCAAGCAAAGGAGGCGCATGCTTGTCGCCGGCTATGATCTTGACATGTCATACATCACAGATCATGTTCTGGCAATGTCATTCCCTGCCGAACGTATGCGTGCAATGTATCGTAACCCCCTATGGCAGGTAAAGTCCGTATTGGACATGAGGCATCAAGGACACTACAAGATCTATAATCTTTGCATTGAAGAATCATATGATCCATCACATTTTCATGGGCGTGTGGAGTCATTTCCTTTCGATGATAATCATGTTCCACCTCTACAGATGATCAAACTTTTCTGTGAAAATGTCTCTTCATGGCTATCATCCCACCCAAAGAATATTGCAGTTATACATTGCATGGCTGGAAAAGGTCGAACTGGATTGATGGTATGTGCCTACTTGGTTTACTGTGGCATGTCACCAGAGGATGCACTTCAGCTGTATGCTCAGAGGCGGACAACCAATAATGAAGGAGTATCAATTCCAAGCCAACGACGGTATGTGGGATACTGGGCAAAGTGTCTTTCCTTTCCCAAGGGAGTTTATAATGGACCACCTGAGGTGAAGTTGCCCGAACCGTGTAGGAGAGAGTTGCAGAGAATTCGTCTTTATGACACAGTTAACACTGAATCAATTTTCTTTGTTGTCTCAGAATTGCAGGAGATTCCTTCTCAGCTGTACCGTCCATCTATGGAACTTACCAGGAATCGTTGCAGACAATTCAAGAAAGGTTATGAGAGATATGACAGTCCTCGTTACTTTTTATCTTTTGTTGAAGGCAAAAACGAAGAGAATGAACCAGAACTCGAACCCCATCTTGTTGTTCAAATGGACACCGAGTGTTCTGCACTGTACCACAAAACCTGCCTTGACTACAATTTTGAGAAGCCTCTACCACTAACTGGAGATGTGCGCATCATATTCTACGCAAAGATGTTCGGAGGGCGTCTCTTCTATGCTTGCTTCAACACAGCTTTCATTAAAAACAGCTTGCTACAGCTGAGGTTGCCGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCAATTTGTGGTCCTTCCTTCTGCTTGGAGTTGGTATTTGGTCCTGCAAATGCAAGACACTCATTTTTTACTTCATCAGATGATGAAAAGTGA 1242 43.48 MGAKFSKPSQAKDSAKVENLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPPLQMIKLFCENVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSPEDALQLYAQRRTTNNEGVSIPSQRRYVGYWAKCLSFPKGVYNGPPEVKLPEPCRRELQRIRLYDTVNTESIFFVVSELQEIPSQLYRPSMELTRNRCRQFKKGYERYDSPRYFLSFVEGKNEENEPELEPHLVVQMDTECSALYHKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLPDLDKVGKKGRSICGPSFCLELVFGPANARHSFFTSSDDEK 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1679284 1684349 + Cp4.1LG04g00450.1 Cpe04g00171 467733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00171 413 Gene3D - 291 401 - -
Cpe04g00171 413 ProSitePatterns Tyrosine specific protein phosphatases active site. 153 163 IPR016130 GO:0016311|GO:0016791
Cpe04g00171 413 ProSiteProfiles C2 tensin-type domain profile. 245 399 IPR014020 -
Cpe04g00171 413 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 53 209 IPR029021 -
Cpe04g00171 413 SMART PTEN_C2_2 227 398 IPR014020 -
Cpe04g00171 413 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 411 - -
Cpe04g00171 413 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 133 188 IPR000387 GO:0016311|GO:0016791
Cpe04g00171 413 ProSiteProfiles Phosphatase tensin-type domain profile. 45 214 IPR029023 -
Cpe04g00171 413 CDD PTP_PTEN 55 209 IPR045101 GO:0016791
Cpe04g00171 413 Pfam Tyrosine phosphatase family 148 190 IPR026893 GO:0004721
Cpe04g00171 413 PANTHER BNAC03G16750D PROTEIN 1 411 - -
Cpe04g00171 413 Pfam C2 domain of PTEN tumour-suppressor protein 322 396 IPR014020 -
Cpe04g00171 413 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 303 398 IPR035892 -
Cpe04g00171 413 Gene3D Protein tyrosine phosphatase superfamily 32 213 IPR029021 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00496 Cpe04g00171 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00496 Cpe-Chr3:2914342 Cpe04g00171 Cpe-Chr4:1679284 0 dispersed
Cpe04g00171 Cpe-Chr4:1679284 Cpe19g00640 Cpe-Chr19:5169575 9.07E-44 dispersed
Cpe04g00171 Cpe-Chr4:1679284 Cpe04g00296 Cpe-Chr4:3737062 3.99E-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00171 K01110 - csv:101212127 768.074