Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00173 ATGGCGACCTCCAAATCCCAAAGGTCTCCTGAGGAGGTGGAAGACATTATCCTTCGTAAAGTTTTCCTTGTCTCTCTCACCCCTCCTTCCGATTCCGATTCTCGCACCGTCTATCTCGAGCAAACCGCCGCCGAGCTCCTTAGCGAAGGCAAGGAATTGAGGATTTCGAGGGATGTAATGGAGCGTATCATAATTGATCGTTTATCCGGTACTTTTCCCTCTGCCGAACCTATTTTTCAGTACCTAATCGGCTGCTACCGTCGGGCTCACGACGAGACTAAGAAAATTGCCTCCATGAAGGATAGGAATTTACGGTCTGAGATTGAGATGGCGCTCAAACAAGCCAAGAAGTTGACGGTTTCCTATTGTAGGATTCATTTGGGGAATCCTGAATTGTTTTCGGGTGGGGATTTGGGTACTAACTCCACTACTTCGCCTTTGCTTCCTTTGATTTTCTCTGAAGTTGGTAGCTCCATGGATGGATTTGGGGCTAGTACCAGTGTTGGTGGAGCCTATCAGTGCCCTCCGGGTTTCATGGAGGAGTTTTTCCGGGATTCGGATTTTGATACATTAGACCCCATATTGAGGGGGTTGTACGAGGATTTGAGGGGTACCGTCCTTAAAGTTTCGGCTCTTGGGAACTTCCAGCAGCCCTTAAGGGCACTTAGGTTTCTTGTTAGTTTTCCCATTGGGGCTAAATCTTTGGTTAATCATCCATGGTGGATTCCCCCTGGTAAATATTCCAATGGCCGTGTCATTGAGAGGACAAGTATTTTGGGGCCTTTCTTCCATGTCAGTGCTCTGCCCGACCATGCCATTTTTAAGAGCCAACCTGATGTTGGGCAGCAATGCTTTTCAGAAGCATCAACTCGTAGACCATCTGATTTACTCTCTTCATTCACTACAATTAAAACAGTCATGAATAACTTATATGATGGTCTTGCGGAAGTTCTTCTCTCTCTTCTTAAGAACACAGAGACCCGTGAAAATGTTCTTGAGTATCTTGCAGAGGTGATAAATAGAAACTCATCAAGGGCTCATATACAGGTACTTGCATATGATTCTAGTGGTGTCAATTGCATGTTTGTTAATCTCAGTGCCATCATGCTACGTCTTTGTGAGCCATTTCTAGATGCAAACTTGACCAAAAGGGATAAAATTGATCCGAAATATGTATGTTATGGTAACCGCTTGGAGTTAAGAGGATTAACTGCTCTACATGCATCGTCTGAAGAAGTTACAGACTGGATTAATAATGGTACTCAGTTGAAAACTGATAACTCCGGGCAGTTCAGTGACAGTGAAAGTCGCTTGCTGCAATCCCAAGAAGCTTCTAGTTCTGGCAGTAATGCTACAATTGAATCTTCTACTACAAAGGCAAGATCGAATAGTGAGAAGACTAGGTACCCTTTCATATGTGAGTGCTTCTTTATGACTGCAAGGGTGCTGAATTTGGGCTTGTTAAAAGCATTTTCGGACTTCAAGCATTTAGTACAGGATATATCTAGGTGTGAAGATACATTGGCCACACTCAAAGCCATGCAAGGACAAGGGCCTGCTCCACAGCTTGAAATGGATGTAGCTCGCCTTGAGAAGGAAATAGAGTTGTACTCACAGGAAAAGCTTTGTTTTGAAGCTCAAATACTGAGGGACGGGAGTCTAATCCAGCAAGCTCTTACTTTCTATCGATTAATGGTCGTATGGTTAGTTGGTTTGATTGGTGGATTTAAAATGCCTCTTCCATCAAGTTGCCCGATGGAATTTGCATCCATGCCAGAGCATTTTGTGGAAGATGCAATGGAATTGCTTATATTTGCTTCCCGAATTCCAAAAGCTTTGGACGGTATCAATTTGGATGATTTTATGAACTTCATCATTATGTTTATGGCAAGTCCGGAATATATTAGAAATCCTTACTTAAGAGCAAAGATGGTTGAAGTTCTCAACTGCTGGATTCCTCGTAGAAGTGGTTCATCTGTAACAGCAACATTATTTGAAGGCCACCAACTATCACTCGAGTATCTTGTTAGGAATCTCTTAAAGCTTTATGTGGACATTGAGTTCACTGGTTCACATACACAGTTTTATGACAAGTTCAACATCCGTCATAATATTGCCGAACTTCTCGAATACCTTTGGCAGGTTCCTAGTCATCGTAATGCTTGGAGAATGATTGCCAAGGAAGAGGAGAAGGGTGTTTACTTGAATTTCTTGAACTTCCTAATCAATGATAGCATATATCTTCTTGATGAAAGCCTTAATAAGATTCTCGAACTTAAAGAGCTTGAAGCTGAAATGTCAAATACTGCAGAATGGGAGCAACGACCTGCTCAAGAGAGGCAGGAGAGAACTAGGCTATTTCACTCCCAAGAAAATATCATCCGGATTGACATGAAATTAGCAAATGAGGATGTGAGTATGCTCGCATTTACAACAGAGCAAATCACAGCTCCTTTCCTACTTCCAGAGATGGTCGAACGGGTGGCCAGCATGCTTAATTATTTCCTCCTGCAACTTGTTGGTCCTCAGCGAAGATCTCTTAGTCTGAAAGACCCTGAAAAGTACGAATTCCGTCCAAAAGAGTTGCTTAAGCAGATTGTTCACATATATGTTCATCTGGCGAGAGGCGATAAGGAGAATATTTTCCCAGCTGCCATTTCGAAGGACGGAAGATCGTATAACGAGCAGTTGTTCAATGCTGCAGCAGTTGTACTTAGACGAATTGGAGAAGATGGTAGGATAATACAGGAATTTATTGCTCTTGGTAACAAGGCAAAGGATGCAGCTTCAGAGGCCATGGATGCTGAGGCTACTCTAGGAGATATACCGGATGAATTCCTTGACCCGATCCAATATACTTTAATGAAGGATCCTGTGATCTTACCTTCTTCAAGGATCACGGTCGACAGACCCGTAATTCAAAGACATCTCCTTAGCGATAGCACCGACCCATTCAACCGGTCTCATCTGACTTCGGACATGCTAATACCAAACGAAGAACTGAAAGCAAGGATCAAAGAGTTCATCATGTCAAAAAAATTGAAGAGGCAACCAGAGGGAGGGGTTGCGATGCAGAGCAGCAAGGCGACGATCCAACCCACAAGCGGAGAAATGTTGATTGATTAA 3126 43.12 MATSKSQRSPEEVEDIILRKVFLVSLTPPSDSDSRTVYLEQTAAELLSEGKELRISRDVMERIIIDRLSGTFPSAEPIFQYLIGCYRRAHDETKKIASMKDRNLRSEIEMALKQAKKLTVSYCRIHLGNPELFSGGDLGTNSTTSPLLPLIFSEVGSSMDGFGASTSVGGAYQCPPGFMEEFFRDSDFDTLDPILRGLYEDLRGTVLKVSALGNFQQPLRALRFLVSFPIGAKSLVNHPWWIPPGKYSNGRVIERTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPSDLLSSFTTIKTVMNNLYDGLAEVLLSLLKNTETRENVLEYLAEVINRNSSRAHIQVLAYDSSGVNCMFVNLSAIMLRLCEPFLDANLTKRDKIDPKYVCYGNRLELRGLTALHASSEEVTDWINNGTQLKTDNSGQFSDSESRLLQSQEASSSGSNATIESSTTKARSNSEKTRYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDTLATLKAMQGQGPAPQLEMDVARLEKEIELYSQEKLCFEAQILRDGSLIQQALTFYRLMVVWLVGLIGGFKMPLPSSCPMEFASMPEHFVEDAMELLIFASRIPKALDGINLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWIPRRSGSSVTATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRMIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWEQRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTTEQITAPFLLPEMVERVASMLNYFLLQLVGPQRRSLSLKDPEKYEFRPKELLKQIVHIYVHLARGDKENIFPAAISKDGRSYNEQLFNAAAVVLRRIGEDGRIIQEFIALGNKAKDAASEAMDAEATLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTSDMLIPNEELKARIKEFIMSKKLKRQPEGGVAMQSSKATIQPTSGEMLID 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1699664 1706518 - Cp4.1LG04g00430.1 Cpe04g00173 467735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00173 1041 MobiDBLite consensus disorder prediction 424 461 - -
Cpe04g00173 1041 MobiDBLite consensus disorder prediction 1019 1041 - -
Cpe04g00173 1041 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 941 1019 IPR013083 -
Cpe04g00173 1041 SUPERFAMILY RING/U-box 934 1015 - -
Cpe04g00173 1041 PANTHER UBIQUITINATION FACTOR E4 1 1016 IPR045132 GO:0000151|GO:0030433|GO:0034450
Cpe04g00173 1041 Coils Coil 520 547 - -
Cpe04g00173 1041 Pfam Ubiquitin elongating factor core 259 925 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Cpe04g00173 1041 PANTHER - 1 1016 - -
Cpe04g00173 1041 SMART Ubox_2 945 1008 IPR003613 GO:0004842|GO:0016567
Cpe04g00173 1041 CDD RING-Ubox_UBE4A 944 1013 - -
Cpe04g00173 1041 ProSiteProfiles U-box domain profile. 941 1015 IPR003613 GO:0004842|GO:0016567
Cpe04g00173 1041 Pfam U-box domain 942 1013 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00494 Cpe04g00173 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00494 Cpe-Chr3:2902783 Cpe04g00173 Cpe-Chr4:1699664 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00173 K10597 - csv:101211398 1900.56