Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g00203 | ATGGGCATTAAGGGTTTAACCAAGCTTTTAGCTGACAATGCTCCCAAAGGCATGAAGGAGCAGAAGTTCGAAAGCTATTTTGGACGAAAAATCGCAATTGATGCCAGCATGAGTATCTATCAATTTCTTATTGTCGTGGGTAGAAGTGGGACTGAGATGTTGACCAACGAAGCTGGTGAAGTCACTAGCCATTTGCAAGGGATGTTTAACCGGACAATAAGGCTTCTCGAAGCTGGAGTTAAGCCAGTCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAGCAAGAACTTGCAAAACGTTATTCAAAGAGAGCAGATGCTACTGCAGACCTGGCAGATGCAATTGAGGTTGGAAACAAGGAGGACATTGAGAAATTCAGTAAAAGGACGGTCAAGGTTACAAAGCAGCACAATGATGACTGTAAAAGACTTTTGAGACTCATGGGAGTGCCTGTGATCGAGGCTCCCTCGGAAGCTGAGGCACAATGTGCTGCGCTTTGCAAGTTAGGAAAGGCAATTTTGCTTTCACAATCTGTTTTCTTTTTCTCTTCACTGAAGAGTTCAAAGGTTGAGACCACTGAAGGAGCTATGGTTTATGCTGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCTAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTTGCAAAGATTTTGGAGGAGCTGAACCTTACCATGGATCAATTTGTCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAGTATCCGAGGTATAGGGGGACAGACTGCTTTAAAGCTTATCCGTCAACATGGGTCTATAGAAAGTATACTAGAGAACATCAATAAAGAAAGGTACCAAATTCCAGAGGGTTGGCCATTTCAAGAGGCCCGACAGCTTTTTAAAGAACCACTAGTGTGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGATGAAGAAGGCTTAATCTCATTTTTGGTGAATGAGAATGGGTTCAATAGCGATAGAGTAACAAAGGCAGTTGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAGTCATTTTTCAAGCCAGTAACCAATCCTTCAGTATCCACTAAGAGAAAGGAGACATCAGAAAAGCCCACCAAACAAGCAATAACTAAGAAATCGAAGTCCAGTGGTGGTAAAAGAAAGTAG | 1227 | 42.05 | MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKAILLSQSVFFFSSLKSSKVETTEGAMVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIESILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKETSEKPTKQAITKKSKSSGGKRK | 408 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2070575 | 2079805 | - | Cp4.1LG04g00130.1 | Cpe04g00203 | 467765 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g00203 | 408 | Gene3D | - | 249 | 312 | - | - | |
Cpe04g00203 | 408 | PANTHER | FLAP ENDONUCLEASE 1 | 1 | 401 | - | - | |
Cpe04g00203 | 408 | ProSitePatterns | XPG protein signature 1. | 80 | 94 | IPR019974 | GO:0016788 | |
Cpe04g00203 | 408 | PANTHER | FLAP ENDONUCLEASE FAMILY MEMBER | 1 | 401 | IPR006084 | - | |
Cpe04g00203 | 408 | Hamap | Flap endonuclease 1 [fen]. | 1 | 373 | IPR023426 | GO:0016788 | |
Cpe04g00203 | 408 | SMART | xpgn3 | 1 | 108 | IPR006085 | GO:0004518 | |
Cpe04g00203 | 408 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 28 | 42 | IPR006084 | - | |
Cpe04g00203 | 408 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 82 | 101 | IPR006084 | - | |
Cpe04g00203 | 408 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 250 | 265 | IPR006084 | - | |
Cpe04g00203 | 408 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 193 | 213 | IPR006084 | - | |
Cpe04g00203 | 408 | SUPERFAMILY | 5' to 3' exonuclease, C-terminal subdomain | 245 | 379 | IPR036279 | - | |
Cpe04g00203 | 408 | MobiDBLite | consensus disorder prediction | 363 | 382 | - | - | |
Cpe04g00203 | 408 | CDD | H3TH_FEN1-Euk | 248 | 315 | - | - | |
Cpe04g00203 | 408 | Pfam | XPG N-terminal domain | 1 | 107 | IPR006085 | GO:0004518 | |
Cpe04g00203 | 408 | SMART | xpgineu | 147 | 245 | IPR006086 | GO:0004518 | |
Cpe04g00203 | 408 | Pfam | XPG I-region | 150 | 260 | IPR006086 | GO:0004518 | |
Cpe04g00203 | 408 | Gene3D | - | 10 | 248 | - | - | |
Cpe04g00203 | 408 | CDD | PIN_FEN1 | 4 | 358 | - | - | |
Cpe04g00203 | 408 | SUPERFAMILY | PIN domain-like | 3 | 260 | IPR029060 | - | |
Cpe04g00203 | 408 | MobiDBLite | consensus disorder prediction | 360 | 408 | - | - | |
Cpe04g00203 | 408 | SMART | HhH_4 | 247 | 280 | IPR008918 | GO:0003677|GO:0003824 | |
Cpe04g00203 | 408 | ProSitePatterns | XPG protein signature 2. | 150 | 164 | IPR019974 | GO:0016788 | |
Cpe04g00203 | 408 | SMART | 53exo3 | 29 | 325 | IPR002421 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g00203 | Cpe-Chr4:2070575 | Cpe20g00142 | Cpe-Chr20:803788 | 3.05E-13 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g00203 | K04799 | - | csv:101204273 | 700.279 |