Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00203 ATGGGCATTAAGGGTTTAACCAAGCTTTTAGCTGACAATGCTCCCAAAGGCATGAAGGAGCAGAAGTTCGAAAGCTATTTTGGACGAAAAATCGCAATTGATGCCAGCATGAGTATCTATCAATTTCTTATTGTCGTGGGTAGAAGTGGGACTGAGATGTTGACCAACGAAGCTGGTGAAGTCACTAGCCATTTGCAAGGGATGTTTAACCGGACAATAAGGCTTCTCGAAGCTGGAGTTAAGCCAGTCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAGCAAGAACTTGCAAAACGTTATTCAAAGAGAGCAGATGCTACTGCAGACCTGGCAGATGCAATTGAGGTTGGAAACAAGGAGGACATTGAGAAATTCAGTAAAAGGACGGTCAAGGTTACAAAGCAGCACAATGATGACTGTAAAAGACTTTTGAGACTCATGGGAGTGCCTGTGATCGAGGCTCCCTCGGAAGCTGAGGCACAATGTGCTGCGCTTTGCAAGTTAGGAAAGGCAATTTTGCTTTCACAATCTGTTTTCTTTTTCTCTTCACTGAAGAGTTCAAAGGTTGAGACCACTGAAGGAGCTATGGTTTATGCTGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCTAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTTGCAAAGATTTTGGAGGAGCTGAACCTTACCATGGATCAATTTGTCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAGTATCCGAGGTATAGGGGGACAGACTGCTTTAAAGCTTATCCGTCAACATGGGTCTATAGAAAGTATACTAGAGAACATCAATAAAGAAAGGTACCAAATTCCAGAGGGTTGGCCATTTCAAGAGGCCCGACAGCTTTTTAAAGAACCACTAGTGTGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGATGAAGAAGGCTTAATCTCATTTTTGGTGAATGAGAATGGGTTCAATAGCGATAGAGTAACAAAGGCAGTTGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAGTCATTTTTCAAGCCAGTAACCAATCCTTCAGTATCCACTAAGAGAAAGGAGACATCAGAAAAGCCCACCAAACAAGCAATAACTAAGAAATCGAAGTCCAGTGGTGGTAAAAGAAAGTAG 1227 42.05 MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKAILLSQSVFFFSSLKSSKVETTEGAMVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIESILENINKERYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKETSEKPTKQAITKKSKSSGGKRK 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2070575 2079805 - Cp4.1LG04g00130.1 Cpe04g00203 467765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00203 408 Gene3D - 249 312 - -
Cpe04g00203 408 PANTHER FLAP ENDONUCLEASE 1 1 401 - -
Cpe04g00203 408 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
Cpe04g00203 408 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 401 IPR006084 -
Cpe04g00203 408 Hamap Flap endonuclease 1 [fen]. 1 373 IPR023426 GO:0016788
Cpe04g00203 408 SMART xpgn3 1 108 IPR006085 GO:0004518
Cpe04g00203 408 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Cpe04g00203 408 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Cpe04g00203 408 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 250 265 IPR006084 -
Cpe04g00203 408 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 193 213 IPR006084 -
Cpe04g00203 408 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 245 379 IPR036279 -
Cpe04g00203 408 MobiDBLite consensus disorder prediction 363 382 - -
Cpe04g00203 408 CDD H3TH_FEN1-Euk 248 315 - -
Cpe04g00203 408 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518
Cpe04g00203 408 SMART xpgineu 147 245 IPR006086 GO:0004518
Cpe04g00203 408 Pfam XPG I-region 150 260 IPR006086 GO:0004518
Cpe04g00203 408 Gene3D - 10 248 - -
Cpe04g00203 408 CDD PIN_FEN1 4 358 - -
Cpe04g00203 408 SUPERFAMILY PIN domain-like 3 260 IPR029060 -
Cpe04g00203 408 MobiDBLite consensus disorder prediction 360 408 - -
Cpe04g00203 408 SMART HhH_4 247 280 IPR008918 GO:0003677|GO:0003824
Cpe04g00203 408 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Cpe04g00203 408 SMART 53exo3 29 325 IPR002421 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00203 Cpe-Chr4:2070575 Cpe20g00142 Cpe-Chr20:803788 3.05E-13 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00203 K04799 - csv:101204273 700.279