Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00209 ATGGCAAGGAAGAAGGTGAAGTTGGCTTACATTGTGAACGACTCCGCAAGAAAGGCCACCTACAAGAAGAGGAAGAAAGGTCTTTTGAAGAAGTTGAGTGAATTAACCACTCTTTGTGGGATCCAAGCTTGCGCAATCGTGTTCAGCCCGTACGATTCTCCGCCCGAGCTTTGGCCCTCCGTCCTCGGCGTCCAACGCGTTCTCTCTCAGTTCAAGAACATGCCCGAAATGGAGCAGAGCAAGAAGATGGTGAACCAAGACACGTTTCTGCGCCAACGGATCGCGAAAGCGGAGGAGCAGCTGAAGAAGATAAGGAAAGAAAATCGCGAGAAGGAGGTGACACGGTTGATGTTCCAGATCCTGACTGGACCAGAATGGTTGCAAGGTCTCACCATGGGGGACTTGAACGACATTAGTTGGGTCATTGACGAGACGCTGAAGGGCATCAGCAAACGCATTGACTCGTTCAAAAGGCTGGTGCCGCCGCCGCCCCAGACGGGGGCGTGGGTGATGGAGGTGGTGAGCCCTGAGGATGGGATGGAGTTTGTAGGGGATGATATGGGTTTGAGTTTCGAAGATCATAGTTATAATAGTGAGAATGTGATATGGTCCAATGCCTTTTTCTCTTAG 630 51.11 MARKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPSVLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQILTGPEWLQGLTMGDLNDISWVIDETLKGISKRIDSFKRLVPPPPQTGAWVMEVVSPEDGMEFVGDDMGLSFEDHSYNSENVIWSNAFFS 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2178725 2179886 + Cp4.1LG04g00070.1 Cpe04g00209 467771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00209 209 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cpe04g00209 209 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Cpe04g00209 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe04g00209 209 Gene3D - 13 113 IPR036879 GO:0003677|GO:0046983
Cpe04g00209 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe04g00209 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe04g00209 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe04g00209 209 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cpe04g00209 209 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 161 - -
Cpe04g00209 209 Coils Coil 87 114 - -
Cpe04g00209 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 53 IPR002100 GO:0003677|GO:0046983
Cpe04g00209 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00209 - - - csv:101203059 282.722
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01774 Cpe-Chr1:13577459 Cpe04g00209 Cpe-Chr4:2178725 8.37E-104 dispersed
Cpe04g00209 Cpe-Chr4:2178725 Cpe20g00649 Cpe-Chr20:4126525 9.70E-66 dispersed
Cpe04g00209 Cpe-Chr4:2178725 Cpe05g01055 Cpe-Chr5:6984166 1.07E-14 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g00383 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Cpe01g00383 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Cpe14g00580 . 1 224 Type I MADS-box Gene Family AT1G77980 54.4 1.6e-58 223.8
Cpe14g00580 . 1 207 Type I MADS-box Gene Family AT1G77950 52.7 7.3e-51 198.0
Cpe01g01774 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.5e-53 204.9
Cpe04g00209 . 1 154 Type I MADS-box Gene Family AT5G48670 60.4 3.6e-47 186.0
Cpe09g00664 . 1 176 Type I MADS-box Gene Family AT5G48670 52.1 3.1e-46 183.0
Cpe20g00649 . 1 163 Type I MADS-box Gene Family AT5G48670 55.2 1.7e-44 177.2
Cpe01g00383 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Cpe01g00383 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Cpe14g00580 . 1 224 Type I MADS-box Gene Family AT1G77980 54.4 1.6e-58 223.8
Cpe14g00580 . 1 207 Type I MADS-box Gene Family AT1G77950 52.7 7.3e-51 198.0
Cpe01g01774 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.5e-53 204.9
Cpe04g00209 . 1 154 Type I MADS-box Gene Family AT5G48670 60.4 3.6e-47 186.0
Cpe09g00664 . 1 176 Type I MADS-box Gene Family AT5G48670 52.1 3.1e-46 183.0
Cpe20g00649 . 1 163 Type I MADS-box Gene Family AT5G48670 55.2 1.7e-44 177.2
Cpe01g00383 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Cpe01g01774 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.5e-53 204.9
Cpe04g00209 . 1 154 Type I MADS-box Gene Family AT5G48670 60.4 3.6e-47 186.0
Cpe09g00664 . 1 176 Type I MADS-box Gene Family AT5G48670 52.1 3.1e-46 183.0
Cpe20g00649 . 1 163 Type I MADS-box Gene Family AT5G48670 55.2 1.7e-44 177.2
Cpe01g00383 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Cpe14g00580 . 1 207 Type I MADS-box Gene Family AT1G77950 52.7 7.3e-51 198.0
Cpe14g00580 . 1 224 Type I MADS-box Gene Family AT1G77980 54.4 1.6e-58 223.8
Cpe01g00383 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Cpe01g01774 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.5e-53 204.9
Cpe04g00209 . 1 154 Type I MADS-box Gene Family AT5G48670 60.4 3.6e-47 186.0
Cpe09g00664 . 1 176 Type I MADS-box Gene Family AT5G48670 52.1 3.1e-46 183.0
Cpe20g00649 . 1 163 Type I MADS-box Gene Family AT5G48670 55.2 1.7e-44 177.2
Cpe01g00383 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Cpe14g00580 . 1 207 Type I MADS-box Gene Family AT1G77950 52.7 7.3e-51 198.0
Cpe14g00580 . 1 224 Type I MADS-box Gene Family AT1G77980 54.4 1.6e-58 223.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49322 PF00319 SRF-TF 7.80E-17 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00209 Cpe_Chr04 FPKM 25.704344 28.262835 12.046056 11.408896 19.30073 16.915829 18.443659 12.467851 11.895514 12.648074