Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00209 ATGGCAAGGAAGAAGGTGAAGTTGGCTTACATTGTGAACGACTCCGCAAGAAAGGCCACCTACAAGAAGAGGAAGAAAGGTCTTTTGAAGAAGTTGAGTGAATTAACCACTCTTTGTGGGATCCAAGCTTGCGCAATCGTGTTCAGCCCGTACGATTCTCCGCCCGAGCTTTGGCCCTCCGTCCTCGGCGTCCAACGCGTTCTCTCTCAGTTCAAGAACATGCCCGAAATGGAGCAGAGCAAGAAGATGGTGAACCAAGACACGTTTCTGCGCCAACGGATCGCGAAAGCGGAGGAGCAGCTGAAGAAGATAAGGAAAGAAAATCGCGAGAAGGAGGTGACACGGTTGATGTTCCAGATCCTGACTGGACCAGAATGGTTGCAAGGTCTCACCATGGGGGACTTGAACGACATTAGTTGGGTCATTGACGAGACGCTGAAGGGCATCAGCAAACGCATTGACTCGTTCAAAAGGCTGGTGCCGCCGCCGCCCCAGACGGGGGCGTGGGTGATGGAGGTGGTGAGCCCTGAGGATGGGATGGAGTTTGTAGGGGATGATATGGGTTTGAGTTTCGAAGATCATAGTTATAATAGTGAGAATGTGATATGGTCCAATGCCTTTTTCTCTTAG 630 51.11 MARKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPSVLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQILTGPEWLQGLTMGDLNDISWVIDETLKGISKRIDSFKRLVPPPPQTGAWVMEVVSPEDGMEFVGDDMGLSFEDHSYNSENVIWSNAFFS 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2178725 2179886 + Cp4.1LG04g00070.1 Cpe04g00209 467771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00209 209 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cpe04g00209 209 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Cpe04g00209 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe04g00209 209 Gene3D - 13 113 IPR036879 GO:0003677|GO:0046983
Cpe04g00209 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe04g00209 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe04g00209 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe04g00209 209 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cpe04g00209 209 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 161 - -
Cpe04g00209 209 Coils Coil 87 114 - -
Cpe04g00209 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 53 IPR002100 GO:0003677|GO:0046983
Cpe04g00209 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01774 Cpe-Chr1:13577459 Cpe04g00209 Cpe-Chr4:2178725 8.37E-104 dispersed
Cpe04g00209 Cpe-Chr4:2178725 Cpe20g00649 Cpe-Chr20:4126525 9.70E-66 dispersed
Cpe04g00209 Cpe-Chr4:2178725 Cpe05g01055 Cpe-Chr5:6984166 1.07E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49322 PF00319 SRF-TF 7.80E-17 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00209 - - csv:101203059 282.722