Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00216 ATGCGACCAATTTTGATGAAAGGCCATGAACGGCCATTGACTTTCCTTAAGTACAACCGGGATGGCGATCTCCTTTTCTCCTGCGCCAAGGATCACAATCCCACCGTCTGGTTCGCCGACAACGGCGAGCGATTGGGGACTTATCGTGGTCATAATGGTGCCGTTTGGTGCTGCGATGTCTCTAGAGATTCAATGCGGCTCATCACCGGCAGTGCGGATCAGACGGCTAAACTGTGGAATGTGCAAACTGGACAACAACTGTTCTCTTTCAATTTTGACTCACCTGCTAGGGCGGTTGATTTCTCCGTCGGCGATAAGCTTGCTGTGATTACCACCGATCCTTTCATGGAATTGCCCTCTGCTATTCACGTTAAACGCATTGCCAGAAATCCCTCGGAACAGACTGGTGAATCTGTGCTTCTTCTGAAGGGTCCTCAGGGAAGAATCAACAGAGCTGTTTGGGGGCCTCTAAATAAAACCATTATAAGTGCAGGAGAAGATGCTGTTATTCGCATTTGGGATTCTGAGACAGGTAAACTTTTAAAAGAATCAGACAAGGAGATGGGCCATAAGAAAACAATAACTTCCCTTACAAAATCCTCTGATGGTTCGCATTTTGTAACTGGTTCTTTGGACAAGTCTGCAAGGCTGTGGGATACTAGAACGTTGACACTTATCAAGACCTATGTGACAGAACGCCCAGTCAATGCTGTTACAATGTCTCCACTTCTTGATCATGTGGTGCTTGGTGGTGGTCAGGATGCTTCAGCAGTGACGACAACCGATCATCGTGCAGGGAAGTTTGAAGCTAAATTCTATGATAAGGTACTTCAAGAAGAGATCGGAGGTGTGAAAGGGCATTTTGGACCCATTAATGCTCTGGCTTTCAATCCTGATGGGAAGAGTTTTTCAAGTGGAGGTGAAGATGGTTATGTAAGACTGCATCATTTTGACCCTGATTACTTCAACATCAAGATTTAA 981 45.77 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKLWNVQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFMELPSAIHVKRIARNPSEQTGESVLLLKGPQGRINRAVWGPLNKTIISAGEDAVIRIWDSETGKLLKESDKEMGHKKTITSLTKSSDGSHFVTGSLDKSARLWDTRTLTLIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKVLQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2542746 2548591 - Cp4.1LG04g02160.1 Cpe04g00216 467778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00216 326 SUPERFAMILY WD40 repeat-like 4 314 IPR036322 GO:0005515
Cpe04g00216 326 SMART WD40_4 222 261 IPR001680 GO:0005515
Cpe04g00216 326 SMART WD40_4 177 219 IPR001680 GO:0005515
Cpe04g00216 326 SMART WD40_4 135 174 IPR001680 GO:0005515
Cpe04g00216 326 SMART WD40_4 277 316 IPR001680 GO:0005515
Cpe04g00216 326 SMART WD40_4 1 38 IPR001680 GO:0005515
Cpe04g00216 326 SMART WD40_4 41 80 IPR001680 GO:0005515
Cpe04g00216 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 314 IPR001680 GO:0005515
Cpe04g00216 326 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 326 - -
Cpe04g00216 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 314 - -
Cpe04g00216 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Cpe04g00216 326 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Cpe04g00216 326 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Cpe04g00216 326 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Cpe04g00216 326 Pfam WD domain, G-beta repeat 283 314 IPR001680 GO:0005515
Cpe04g00216 326 Pfam WD domain, G-beta repeat 189 219 IPR001680 GO:0005515
Cpe04g00216 326 Pfam WD domain, G-beta repeat 43 80 IPR001680 GO:0005515
Cpe04g00216 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 222 - -
Cpe04g00216 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Cpe04g00216 326 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Cpe04g00216 326 CDD WD40 7 314 - -
Cpe04g00216 326 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Cpe04g00216 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Cpe04g00216 326 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 326 IPR027525 GO:0003743|GO:0005737|GO:0005852
Cpe04g00216 326 Gene3D - 1 326 IPR015943 GO:0005515
Cpe04g00216 326 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 326 - -
Cpe04g00216 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Cpe04g00216 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515
Cpe04g00216 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00497 Cpe-Chr3:2920379 Cpe04g00216 Cpe-Chr4:2542746 0 dispersed
Cpe04g00216 Cpe-Chr4:2542746 Cpe04g01177 Cpe-Chr4:10021124 8.19E-11 dispersed
Cpe04g00216 Cpe-Chr4:2542746 Cpe18g00462 Cpe-Chr18:5590546 1.26E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00216 K03246 - csv:101211648 661.759