Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00234 ATGAGTCAGACAGAAGTATCAAGGATTAAACCCCCTCTCGTTCCGCTTGCTACCTTGATTGGTCGCGAGCTGAGGAACGAGAGGGTTGAGAAACCTTTTGTGAAGTATGGACAGGCTGCTTTGGCAAAGAAAGGAGAGGACTACTTTCTGATTAAGCTTGATTACCACCGTATTCCTGGAAACCCTTCTACTGCATTTTCTGTTTTTGCGATTTTTGATGGGCATAATGGCATATCAGCCGCTATCTTTGCAAAGGAACATTTACTGGGTAATGTTTTAAGTGCAATTCCTCAAGGGGCCAGTCGAGAAAAATGGCTACAAGCCCTTCCTCGAGCATTAGTTGCTGGTTTTGTCAAAACTGACATAGAGTTTCAGCAAAAAGGGGAAACTTCTGGAACTACTGTTACATTTGTTGTGATTGATGGGTGGACTGTTACAGTGGCGTCCGTGGGAGATTCACGGTGCATATTAGACACCCAAGGAGGTGTGGTTTCTCTATTGACGGTTGATCATAGGCTGGAGGAAAATGAGGAAGAGAGGAAACGTGTAACTGCGAGTGGTGGTGAGGTTGGGAGGCTCAATGTTTTCGGCGGCAATGAGGTCGGTCCTCTCCGCTGCTGGCCTGGTGGCTTATGTCTTTCTAGGTCCATTGGTGATACAGATGTAGGAGAATATATTGTCCCGATACCGCATGTTAAGCAAGTGAAGCTTTCTAATGCTGGCGGACGACTAATAATTGCTTCTGATGGTATATGGGATGCTTTATCGTCTGATATGGCTGCAAAGTCTTGTCGTGGTTTACCTGCAGAGCTTGCTGCTAAGCTAGTCGTGAAGGAGGCTCTGCGGTCGAGGGGGTTGAAGGATGATACAACTTGCTTAGTTGTTGATATCATACCATCCGAGCAACCTATATTATTACCACCAACTCCAAGGACGAAGCAAAATGTGCTCACCACACTCTTTGGGAAGAAATATCAAAACTCTTTGGGCAAATCTGCAAATAAACTTTCTGCTGTTGGAGTGGTGGAGGAATTGTTTGAAGAAGGTTCCGCTATGCTTGCTGAAAGGTTAGGCAAAGATTTAGCGTCAGATCCAAACTCAGGGATCTTCAAATGTGCAGTTTGTCAAGTGGATCAACCCCCAAATGAAAACTTGTCGATGAATTCGGGGCCTTTCTTTTCGCCATCGTCAAAGCCATGGGAAGGTCCGTTCCTCTGTGCAACATGTCGAAGAAAGAAAGACGCCATGGAAGGAAAAAGGGCGACAAAACCTACAATAACCGTCTAG 1287 45.61 MSQTEVSRIKPPLVPLATLIGRELRNERVEKPFVKYGQAALAKKGEDYFLIKLDYHRIPGNPSTAFSVFAIFDGHNGISAAIFAKEHLLGNVLSAIPQGASREKWLQALPRALVAGFVKTDIEFQQKGETSGTTVTFVVIDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENEEERKRVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSEQPILLPPTPRTKQNVLTTLFGKKYQNSLGKSANKLSAVGVVEELFEEGSAMLAERLGKDLASDPNSGIFKCAVCQVDQPPNENLSMNSGPFFSPSSKPWEGPFLCATCRRKKDAMEGKRATKPTITV 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2873135 2876627 + Cp4.1LG04g08500.1 Cpe04g00234 467796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00234 428 SUPERFAMILY PP2C-like 43 297 IPR036457 -
Cpe04g00234 428 CDD PP2Cc 43 297 IPR001932 -
Cpe04g00234 428 Gene3D - 38 302 IPR036457 -
Cpe04g00234 428 Pfam Protein phosphatase 2C 63 280 IPR001932 -
Cpe04g00234 428 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 2 427 - -
Cpe04g00234 428 PANTHER ALPHABET, ISOFORM E-RELATED 2 427 - -
Cpe04g00234 428 SMART PP2C_SIG_2 33 297 IPR001932 -
Cpe04g00234 428 ProSiteProfiles PPM-type phosphatase domain profile. 28 297 IPR001932 -
Cpe04g00234 428 SMART PP2C_4 23 295 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01332 Cpe-Chr1:8016062 Cpe04g00234 Cpe-Chr4:2873135 1.42E-161 dispersed
Cpe04g00234 Cpe-Chr4:2873135 Cpe09g00317 Cpe-Chr9:1882819 0 dispersed
Cpe18g00033 Cpe-Chr18:574342 Cpe04g00234 Cpe-Chr4:2873135 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00234 - - csv:101219622 810.446