Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00235 ATGGCTTCTTTTGTCAAGCCAGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAGGATGCCTTGCAAGCTCTTCATGATCTTATAACTTCAAAGAAATATAGAGCATGGCAGAAACCTCTTGAGAGGATTATGTTTAAGTATGTTGAGCTTTGTGTGGACATGAGGAAAGGAAGGTTTGCAAAGGATGGTTTGATTCAGTACCGTATTGTTTGCCAGCAAGTCAATGTTACTTCTTTAGAGGAAGTAATCAAGCACTTTATGCATCTTTCCACTGAGAAGGCAGAGCAGGCTCGTAGTCAAGCTCAAGCATTAGAAGAAGCTCTTGATGTTGATGACTTGGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGTGGGGAGAAAGGAAAGGACAGATCTGATCGCGAACTTGTTACCCCTTGGTTTAAATTTCTATGGGAGACATATCGAACAGTTCTTGAGATACTAAGGAATAACTCAAAGTTGGAAGCACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTTTGTAAGCTGTACAAAAGGACAACAGAATTTCGCAGATTATGTGAAATTATCAGAAATCATCTTGCTAATCTCAACAAGTATAGAGACCAAAGAGATCGGCCTGACCTATCTGCTCCAGAGAGCTTGCAGTTGTACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACGGAGCTTGAACTCTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATTCATGGTTTGATGTGTATGGTGAAGAAAACACCCAAGCCATCGTTGATGGTGGTTTACTACGTCAAATTAACAGAGATCTTCTGGATATCGGATAGTAATCTTTATCATGCCTATGCATGGCTTAAACTTTTCTCCCTTCAGAAGAGTTTCAACAAAAATCTAAGCCAGAAGGACCTACAGCTGATAGCATCATCTGTTGTGTTAGCCGCTCTTGCAGTGCCCCCCTATGACTCCAAGCATGGTGCATCACATTTAGAACTGGAACATGAGAAAGAGCGAAGTTTGAGGATGGCTAATCTCATAGGGTTCGGTTTAGACTCCAAACTTGAGAGTAGAGATGTGCTTTCGAGGGAAAATCTTCTCTCTGAACTGGTGTCTAAAGGAGTCCTGAGCTGTGCAACTCAGGAAATTAAAGATCTTTATCATCTTTTGGAGCATGAGTTCTTCCCTCTCGATCTTGCATTAAAATTGCAACCGTTGTTCACAAAAATATCTAAGCTTGGAGGTAAGCTTTCATCAGCCTCATCTGTACCCGAATTGCAATTGTCTCAATATGTTCCAGCTCTTGAAAAACTTGCTACCCTGAGGCTACTTCAGCAGGTCTCCCATGTATACCAGACTATGAAAATTGAGAGTCTGTCGCAGATGATCCCATTTTTTGATTTTTCTGCCGTGGAGAAAATATTAGTTGATGCAGTTAAACAAAATTTCATCGCCATGAAAGTCGATCATTCAAGGAACATCGTCTTATTTGGCAATTTGGGTATTGAATCAGAAGGGCTTCGGGACCACCTGACTGTGCTTGCTGAGTCCCTAAACAAAGTAAGAGCCATGATCTACCCTCCTGTAAAGAAAACATCAAAAACAGGTGAAATATTGCCTGATTTAGCAGATATTGTTGATAAAGAGCACAAGAGGCTTCTTGCTCGGAAATCAATAATTGAGAAAAGGAAGGAAGAGCAGGAACGACAACTTTTGGAAATGGAACGTGAGGAGGAATCAAGAAGGTTAAAATTACTAAAGATAACTGAAGAGGCTGAGCAGAAGCGTCTTGCTTTAGAATATGAACAAAGGAAAAGTCAACGGCTTCGTAGGGAAATGGAAGAGCGAGAACTTGAAGAAGCACAGGCATTACTTCAGGAAGCTGAAAAGCGTGTTGGTAAAAAGAAGGGAAGCAGGAAGCCGGTTCTTGATTCCGAAAAGTTGACTAAACAAACCTTAATGCAATTGGCCCTTACTGAACAATTAAGGGAGAGGCAGGAAATGGAAAAGAAATTGCAGAAGCTTTCCAAAACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCAGCAACGTTAATCGAAGCTGCATTTCAGCAACGTTTGCTTGAAGAGAGGACGATTCATGAACGTGATCAGCAGCTGGAGGTCGAGTTAAGCAAGCAGCGCCATGAAGGTGACCTGAAGGAGAAGAACAGATTGGCAAGAATGTTGGAGAGCAAGAAAATTTTCCAAGAAAGAGTTATCAGTCTTCGCCAAGAGGAGTTCAACAAACGTAGAGCTGAGAGAGAAGAACATATCAGGCAAATAATTCAGTCTCGTAAAGCAGAAAGAGAGGCTAAGAGAAAGAAAATCTTTTATGTTAGGCGTGAAGAGGAGAGGATCAGAATATTGCGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAAGCCGAAAGGAGGAAAAGGGAGGAAGCTGAACGCAAGGCAAAATTGGATGAGATTGCTGAGAAGCAGAGGCAGAGAGAGCGCGAATTGGAAGAAAAAGAAAGACTGCGGAAAGAAATGCTCTTTAGTGGAGGCAAGTCAGGCGATGCTTCTGCTAGGCCTGATGTTTCTCCTGCTTCTCGACCTCAGGAGTCTAGGACTGCTTCTCCTGCTGCTGCAGCTGCTGCGGCTGCAGCCCCGGCCGCAGGAAAATATGTGCCAAGGTTCCTACGTGAACGGACTGAGAGCTCCAGCCCTAATGCACCACCTCCTGAATCTGATCGATGGGGAAGCAGCAGGCCTGACAATCGACCATCTCAGCCAGGGAGCTGGCGCAATGATGATCGTAGACCTGCTGCATTTGGAAGTTCAAGGTCGTCGTGGTCGTCGTCTCGAGTTCCTGCTCGTGGTGGCCCGGAGCGCTAA 2922 43.77 MASFVKPENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKLYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDSNLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVVLAALAVPPYDSKHGASHLELEHEKERSLRMANLIGFGLDSKLESRDVLSRENLLSELVSKGVLSCATQEIKDLYHLLEHEFFPLDLALKLQPLFTKISKLGGKLSSASSVPELQLSQYVPALEKLATLRLLQQVSHVYQTMKIESLSQMIPFFDFSAVEKILVDAVKQNFIAMKVDHSRNIVLFGNLGIESEGLRDHLTVLAESLNKVRAMIYPPVKKTSKTGEILPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLALEYEQRKSQRLRREMEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLTKQTLMQLALTEQLRERQEMEKKLQKLSKTMDYLERAKREEAATLIEAAFQQRLLEERTIHERDQQLEVELSKQRHEGDLKEKNRLARMLESKKIFQERVISLRQEEFNKRRAEREEHIRQIIQSRKAEREAKRKKIFYVRREEERIRILREEEEARKREEAERRKREEAERKAKLDEIAEKQRQRERELEEKERLRKEMLFSGGKSGDASARPDVSPASRPQESRTASPAAAAAAAAAPAAGKYVPRFLRERTESSSPNAPPPESDRWGSSRPDNRPSQPGSWRNDDRRPAAFGSSRSSWSSSRVPARGGPER 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2879879 2887607 - Cp4.1LG04g08460.1 Cpe04g00235 467797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00235 973 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 960 IPR027512 GO:0005852
Cpe04g00235 973 Gene3D UVR domain 217 268 - -
Cpe04g00235 973 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 915 - -
Cpe04g00235 973 Gene3D - 269 343 - -
Cpe04g00235 973 Gene3D - 364 494 - -
Cpe04g00235 973 Coils Coil 669 699 - -
Cpe04g00235 973 MobiDBLite consensus disorder prediction 815 973 - -
Cpe04g00235 973 SMART PINT_4 441 532 IPR000717 -
Cpe04g00235 973 Coils Coil 799 858 - -
Cpe04g00235 973 Coils Coil 732 752 - -
Cpe04g00235 973 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 915 IPR027512 GO:0005852
Cpe04g00235 973 Coils Coil 561 600 - -
Cpe04g00235 973 MobiDBLite consensus disorder prediction 815 861 - -
Cpe04g00235 973 Coils Coil 610 649 - -
Cpe04g00235 973 Coils Coil 93 120 - -
Cpe04g00235 973 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 - -
Cpe04g00235 973 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Cpe04g00235 973 Pfam PCI domain 373 509 IPR000717 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00031 Cpe-Chr18:552463 Cpe04g00235 Cpe-Chr4:2879879 6.79E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00235 K03254 - csv:101209344 1537.7