Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00237 ATGACACCCGTTTGGAGCTATGTTATGTCCAAGTGGCAAACGTTGTCCACTTCTGATCACGCCTCTGTGGTTTCCATTAACTTATTTGTAGCTCTTCTCTGTGCTTGTATTGTGATTGGTCATCTTCTTGAGGAGACCCGGTGGATGAATGAGTCGATCACTGCCCTCTTCATTGGTATGTTTACCGGAGTCATCATTTTACTGGTCAGTGGTGGGAAAAGTTCGCATTTATTGCTCTTCAGCGAAGACATATTCTTCATTTATCTTCTGCCACCTATCATATTCAATGCTGGGTTTCAGGTGAAAAAGAAGCAGTTCTTTGTTAACTTCATTACAATTATGCTGTTTGGTGCAATTGGTACATTAGTCTCTTGTTCAATCATCTCATTAGGAGCTTTTCAGATCTTTCAGAGAATGGATGTTGGAACACTGGATATTGCCGATATTTTAGCAATTGGAGCTATATTTGCAGCTACAGATTCTGTATGCACATTGCAGATATTAAACCAGGATGAAACACCTCTACTTTACAGTCTAGTATTTGGGGAGGGTGTAGTGAATGATGCTACATCTGTGGTGCTTTTCAATGCAATTCAGAGCTTAGACCTCAGTAAAGTTGATGCAAGAGTTGCTTTGCATTTTATCGGGAGCTTCTTTTATTTGTTTTCAACGAGCACTCTACTCGGAGTGTTTGTTGGGCTGCTGAGTGCTTATACAATCAGAAAGTTATATTTTGGCAGGCACTCGACAGATCGTGAGGTTGCTCTAATGATGCTCATGGCATACCTTTCATATATGCTGGCTGAATTATTAGATTTGAGTGGCATTCTCACAGTGTTCTTTTGTGGAATTGTAATGTCACACTATACATGGCATAATGTGACTGAGAGTTCAAGAGTTACCACTAAGCATGCTTTTGCTACCTTATCCTTCATTTCAGAGACGTTTATCTTCGTTTATGTTGGCATGGATGCCTTGGACATTGAGAAGTGGAGCTATGTTAGTGATAGTCCAGGGACATCTGTTGCTGTGAGTGCAATATTACTAGGCCTGGTTATGGTTGGAAGAGCTGCTTTTGTTTTTCCATTATCATTTTTATCCAACTTAGTTAAAAAATCGGCTTCCGAGAAAATTACCTTCAGGCAACAAGTTATAATTTGGTGGGCTGGTCTCATGAGAGGGGCTGTCTCTATTGCTCTTGCTTATCATCAGTTCACTAGAGCTGGCCACACTCAACTGCGGGGGAATGCAATTATGATAACTAGTACCGTAACTGTTGTCCTTTTTAGCACGATGGTGTTTGGGATATTGACCAAGCCTCTTATAAATTGTTTGGTACCTCACCCCAAAGACACCACCAGCTCCAGCATGCTATCGGAACCAGCGGCTCCAAAATCATTCTCGGTACCGCTACTCGGAAGTGCACAGGATTCGGAGGTGGATCTTGATAGTCCCAATATTCCTCGTCCAAGCAGTATCCGTGCACTCCTTGCGACTCCTACGCATACTGTTCATCGTTACTGGCGAAAATTTGATGATGCCTTCATGCGTCCAATGTTCGGGGGCCGGGGTTTTGTCCCCTTTGTTCCAGGATCGCCAACAGAAAGGGGTAGGCACTGA 1620 42.78 MTPVWSYVMSKWQTLSTSDHASVVSINLFVALLCACIVIGHLLEETRWMNESITALFIGMFTGVIILLVSGGKSSHLLLFSEDIFFIYLLPPIIFNAGFQVKKKQFFVNFITIMLFGAIGTLVSCSIISLGAFQIFQRMDVGTLDIADILAIGAIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSLDLSKVDARVALHFIGSFFYLFSTSTLLGVFVGLLSAYTIRKLYFGRHSTDREVALMMLMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFISETFIFVYVGMDALDIEKWSYVSDSPGTSVAVSAILLGLVMVGRAAFVFPLSFLSNLVKKSASEKITFRQQVIIWWAGLMRGAVSIALAYHQFTRAGHTQLRGNAIMITSTVTVVLFSTMVFGILTKPLINCLVPHPKDTTSSSMLSEPAAPKSFSVPLLGSAQDSEVDLDSPNIPRPSSIRALLATPTHTVHRYWRKFDDAFMRPMFGGRGFVPFVPGSPTERGRH 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2910144 2916587 + Cp4.1LG04g08510.1 Cpe04g00237 467799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00237 539 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cpe04g00237 539 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cpe04g00237 539 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cpe04g00237 539 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cpe04g00237 539 PANTHER SODIUM/HYDROGEN EXCHANGER 7 539 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cpe04g00237 539 PANTHER SODIUM/HYDROGEN EXCHANGER 2 7 539 - -
Cpe04g00237 539 Pfam Sodium/hydrogen exchanger family 29 443 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cpe04g00237 539 Gene3D - 145 197 - -
Cpe04g00237 539 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 24 453 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00800 Cpe-Chr2:5117043 Cpe04g00237 Cpe-Chr4:2910144 0 dispersed
Cpe04g00237 Cpe-Chr4:2910144 Cpe12g00971 Cpe-Chr12:8191682 0 dispersed
Cpe04g00237 Cpe-Chr4:2910144 Cpe11g00927 Cpe-Chr11:7755738 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00237 - - csv:101214934 948.347