Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00238 ATGGCTAGAGAGATTCTAATCCTTCGGAGATTAAATCATAATAACGTTGTGAAATTGGAGGGGTTGGTCACATCGCGGATGTCTTGTAGTTTATACTTGGTGTTTGAGTACATGGAACATGATTTAGCTGGTCTTGCTGCAAATCCATCAATCAAGTTTACGGAATCTCAGGTTAAATGTTTCATGCAACAACTGCTATCTGGACTGGAACACTGTCACAATCGTCATGTGCTTCACCGTGATATTAAAGGATCTAATCTTCTCATTGATAGTGGGGGAGTGCTTAAGATTGCTGATTTTGGATTGGCTTCTTTCTTTGATCCTAATCACAAGCACCCAATGACTAGTCGAGTTGTTACCTTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCAACTGATTATGGAGTAGGTGTAGACCTCTGGAGTGCTGGGTGTATACTGGCTGAGTTATTAGCTGGGAGGCCTATTATGCCTGGCCGTACAGAGGTGGAGCAACTACACAAGATATACAAGCTTTGTGGCTCCCCTTCAGATGAATATTGGAAAAGAGCAAAGCTTCCAAATGCAACATTATTTAAGCCCAGAGAACCTTACAAAAGATGTATAAAGGAGACATTTAAAGATTTCCCGCTATCTTCCCTGCCCCTTATAGAAACGCTTCTTGCAATTGATCCAGTTGAACGAAAGACAGCAACAGATGCATTAAATAGCGAGTTCTTCATGACAGAGCCTTTAGCTTGCAAACCCTCCAGCCTCCCGAAATATCCTCCCAGTAAGGAGATGGATGCTAGAAGACGGGATGATGAAGCCCGGAGACTAAGAGCAGCTAACAAAGCCCAGGGAGATGGAGTGAAGAAAACACGCACACGTGTTAGGGCGATTCCAGCTCCTGAAGCCAATGCAGAAATACAAACAAATATCGATAGAAGGCGCTTAATTACACATGCAAATGCAAAGAGCAAAAGCGAAAAGTTCCCCCCACCGCACCAGGACGGAGCGCTTGGCTTTACGCTAGGATATTCACGGCATATGGATCCATCCGGTGTTCCTCCCGACATACCATTCAGCTCGACGCTGTTCACTTACTCTAAGGAGCCAGTCCAAGTCTGGTCTGGTCCACTGGTCCCTGGTGCTGGCACTGATGCTCCACCTAGGCAGAAGAAGCATGTGGGAGGTAAAGGCAAGAAAATCATGGTCTAA 1203 45.22 MAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFMQQLLSGLEHCHNRHVLHRDIKGSNLLIDSGGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRAKLPNATLFKPREPYKRCIKETFKDFPLSSLPLIETLLAIDPVERKTATDALNSEFFMTEPLACKPSSLPKYPPSKEMDARRRDDEARRLRAANKAQGDGVKKTRTRVRAIPAPEANAEIQTNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHMDPSGVPPDIPFSSTLFTYSKEPVQVWSGPLVPGAGTDAPPRQKKHVGGKGKKIMV 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2917641 2930819 - Cp4.1LG04g08470.1 Cpe04g00238 467800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00238 400 SUPERFAMILY Protein kinase-like (PK-like) 2 245 IPR011009 -
Cpe04g00238 400 Gene3D Phosphorylase Kinase; domain 1 1 39 - -
Cpe04g00238 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
Cpe04g00238 400 PANTHER CELL DIVISION PROTEIN KINASE 1 382 - -
Cpe04g00238 400 SMART serkin_6 1 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00238 400 Gene3D Transferase(Phosphotransferase) domain 1 40 281 - -
Cpe04g00238 400 MobiDBLite consensus disorder prediction 375 400 - -
Cpe04g00238 400 Pfam Protein kinase domain 2 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00238 400 ProSiteProfiles Protein kinase domain profile. 1 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe04g00238 400 PANTHER OS01G0367700 PROTEIN 1 382 - -
Cpe04g00238 400 MobiDBLite consensus disorder prediction 251 271 - -
Cpe04g00238 400 Coils Coil 395 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00238 Cpe-Chr4:2917641 Cpe11g00928 Cpe-Chr11:7792142 0 dispersed
Cpe04g00238 Cpe-Chr4:2917641 Cpe03g01388 Cpe-Chr3:11172333 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62331 PF00069 Pkinase 5.50E-55 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00238 K08819 - csv:101215893 780.015