Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00251 ATGGCGGTTGGAGCTCTCTCTCGCCCATTCACCACCATCTCTTCCCTCTCTCATTCCGACACTCCCACCTCTAGACCTCCTCCTCCTCCTCCTCCTCCATTCCTCAACTTCCGCACTGCACATTACCACAACCTCCGTTACCTCAAATCCCTCCGCCTCCTCGATTCCCATAGTACAAAGCTCCGATCTCCCGATGCCGTCCATAGTATCCTCGCCACCGTCCATTTCCTCAAGTCCAAGGGCTTCTCCGACTCCGACTTCCCCACACTCGCCTTCCTCTGCCCCCAACTCTTCTCTCCCGACTTTGAACCCACCGACATTGCTCCTGTCTTCGACTTCTTGGCTGCCGATCTATCTGCTTCCATCCAAGAATCACGTGGCATGATCCTCCGCTGCCCTAAGCTTCTCTTCTCCGACGTCGAGTTGTGTCTCCGGCCAACGCTCAGATTCCTGAAGCAAATAGGGATCGAGAATCTGAACACGCCCAGCAATCTGAAATCGCACCTGTTGAATACTCGGGTGGAGAAGCTGAGAGGCAAATTCAGATTCTTGCAGGAGTTGGGATTCTCGCACGAGGAGGCAGCAAAGGTATGCAGGAGAATGCCAGCGCTATTCGGGTACAGTGTAGAGGAGAATTTGAGGCCAAAGTATGAGTATTTGGTGAATGAAATGGAGAGAGATGTGGAGGAACTGAAAGAGTTCCCGCAGTACTTTGCATTCAGTTTGGAGAGACGAATAGCGCCAAGGCATTTGCATCTCAAACAAAGGAACCTTAGAATTCCACTCCACAGAATGCTCTTGTGGAGTGACCAAAAATTTTACACCAAATGGAAATGA 837 51.25 MAVGALSRPFTTISSLSHSDTPTSRPPPPPPPPFLNFRTAHYHNLRYLKSLRLLDSHSTKLRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDVEELKEFPQYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3129477 3130313 - Cp4.1LG04g08290.1 Cpe04g00251 467813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00251 278 Pfam mTERF 126 273 IPR003690 GO:0003690|GO:0006355
Cpe04g00251 278 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC 21 278 - -
Cpe04g00251 278 Gene3D Transcription termination factor 3, mitochondrial 43 278 IPR038538 -
Cpe04g00251 278 SMART mt_12 195 227 IPR003690 GO:0003690|GO:0006355
Cpe04g00251 278 SMART mt_12 88 121 IPR003690 GO:0003690|GO:0006355
Cpe04g00251 278 SMART mt_12 51 83 IPR003690 GO:0003690|GO:0006355
Cpe04g00251 278 SMART mt_12 162 190 IPR003690 GO:0003690|GO:0006355
Cpe04g00251 278 SMART mt_12 228 259 IPR003690 GO:0003690|GO:0006355
Cpe04g00251 278 SMART mt_12 126 157 IPR003690 GO:0003690|GO:0006355
Cpe04g00251 278 MobiDBLite consensus disorder prediction 13 33 - -
Cpe04g00251 278 PANTHER CGI-12 PROTEIN-RELATED 21 278 IPR003690 GO:0003690|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00251 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - csv:101203623 407.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00251 Cpe-Chr4:3129477 Cpe09g00187 Cpe-Chr9:1079376 6.15E-44 dispersed
Cpe04g00251 Cpe-Chr4:3129477 Cpe20g00540 Cpe-Chr20:3144883 4.85E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g583 . . . . . . . . . . . . . . . Cpe04g00251 . . . . . . . . . . . . . . . . . . . . Csa07g00824 . . . . . . . . . . . . . . . Car11g01067 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012267 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49324 PF02536 mTERF 1.10E-32 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00251 Cpe_Chr04 FPKM 0.0 0.0 0.0 0.992982 1.191881 0.691363 0.0 1.933039 2.143928 2.297372