Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00259 ATGGGAGAGGCCTTGGCCTTTGATGCTTCCTTTATCCAACCCATTCAGCACCGCCCGAAGCTCGAACCCGTCGACCCCATCGACGAAGTTCCCACTATTGATCTCTCCATCTCCGACTCTCGTAGCGTAGAACAACTTGTTTCTGACATAGCCTCTGCTTGCGAGAACTGGGGTTTCTTCCAGGTCATCAACCATGGAGTTCCCATGGAGTTGGTTGCGAGAATGGAGAAAGTAGCGAAGTTGTTTTTTGACCAGGGAGTAGAGGAGAAGAGGAAGGTGAAGAGAGATGCAGCCAACGCTATGGGGTACCATGATGGTGAGAATACGAAAAACGTTAGGGATTGGAAGGAGGTGTTTGATTTCTTGGTTAAGGATCGGACGTTGGTTCCGGCTTCGCACGAGCCAGATGACACGAATTTGAGGGTTTTGACTAATCAGTGGCCACAATATCCCCCTGAATTTAGTGAAACATGTGAGGAGTATGCAAAGGAGTTGGAATTGTTAGCTTATAAGCTACTGGGGCTGATTTGTTCGAGTCTTGGATTGCCCATTGCGGATAGATTGAAGGGTTATTTCCAAGATGAGCAAATGAGCATGGTGAGATTGAATCGCTATCCTCCATGCTCATCTCCAGATCTTGTGCTTGGCGTTGGGCGTCACAAGGATGCCGGTGCCTTGACTATCCTTGCCCAAGATGGTGTTGGAGGGCTACAAGTGAGGAGAAAATCAGATGGAGAATGGATTCCTGTCAAACCAATCTCAAATGCATATATTGTTAACATTGGTGACATTGTTCAAGTTTGGAGCAATGACAAATACGAAAGTGTGGAGCACAGGGTGGTGGTGAATACAGAGAAGGAAAGGTTTTCCATTCCATTCTTCTTCTTTCCAGCGCACCATACAATGGTGAAGCCATTGGAGGAGGTTGTGAATGAACAAAATCCCCCAAAATACAGAGAATACAACTTTGGGAAGTTCTTTGCTTCCAGAAACCGCAGTGATTTCCAGAAACAAAAAGTGGAAAACGTCCAAATTGACCATTTTAGGCTGCCTGTGTGA 1059 46.27 MGEALAFDASFIQPIQHRPKLEPVDPIDEVPTIDLSISDSRSVEQLVSDIASACENWGFFQVINHGVPMELVARMEKVAKLFFDQGVEEKRKVKRDAANAMGYHDGENTKNVRDWKEVFDFLVKDRTLVPASHEPDDTNLRVLTNQWPQYPPEFSETCEEYAKELELLAYKLLGLICSSLGLPIADRLKGYFQDEQMSMVRLNRYPPCSSPDLVLGVGRHKDAGALTILAQDGVGGLQVRRKSDGEWIPVKPISNAYIVNIGDIVQVWSNDKYESVEHRVVVNTEKERFSIPFFFFPAHHTMVKPLEEVVNEQNPPKYREYNFGKFFASRNRSDFQKQKVENVQIDHFRLPV 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3204128 3206475 + Cp4.1LG04g08250.1 Cpe04g00259 467821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00259 352 PANTHER DIRIGENT PROTEIN 7 342 - -
Cpe04g00259 352 SUPERFAMILY Clavaminate synthase-like 10 335 - -
Cpe04g00259 352 Pfam non-haem dioxygenase in morphine synthesis N-terminal 30 149 IPR026992 -
Cpe04g00259 352 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 196 297 IPR005123 -
Cpe04g00259 352 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 7 342 - -
Cpe04g00259 352 Pfam 2OG-Fe(II) oxygenase superfamily 198 297 IPR044861 -
Cpe04g00259 352 Gene3D - 3 337 IPR027443 -
Cpe04g00259 352 PRINTS Isopenicillin N synthase signature 50 67 - -
Cpe04g00259 352 PRINTS Isopenicillin N synthase signature 220 241 - -
Cpe04g00259 352 PRINTS Isopenicillin N synthase signature 285 303 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00259 - - - csv:101209915 549.666
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01067 Cpe-Chr2:9768792 Cpe04g00259 Cpe-Chr4:3204128 1.58E-42 dispersed
Cpe04g00259 Cpe-Chr4:3204128 Cpe15g00509 Cpe-Chr15:6021892 5.59E-114 dispersed
Cpe14g00931 Cpe-Chr14:7829846 Cpe04g00259 Cpe-Chr4:3204128 4.46E-34 dispersed
Cpe20g00028 Cpe-Chr20:143468 Cpe04g00259 Cpe-Chr4:3204128 1.68E-34 dispersed
Cpe05g01183 Cpe-Chr5:8152608 Cpe04g00259 Cpe-Chr4:3204128 2.32E-37 transposed
Cpe20g00384 Cpe-Chr20:2164518 Cpe04g00259 Cpe-Chr4:3204128 5.76E-52 transposed
Cpe15g00508 Cpe-Chr15:6018436 Cpe04g00259 Cpe-Chr4:3204128 8.38E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g494 . . . . . . . . . Cmo11g01335 . . . . . Cpe04g00259 . . . . . . . . Cla02g00570 Cam02g0600 Cec02g0600 Cco02g0611 Clacu02g0596 Cmu02g0594 . . . . . . . . Cme01g00017 . . . . Bpe15g00885 . . . . . . . . Car11g01076 . . . . . . . . . . . . . . . . . Lsi11g01040 . Chy01g00022 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00259 Cpe_Chr04 FPKM 7.566952 7.581631 27.838459 31.889244 421.360596 314.953308 423.413971 17.827215 17.645124 19.497746