Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00261 ATGGCGACCCACCTTCAAATTTCCGCTAAAATGGCCCTTCACGCCCCTGTTCTTCTAGCGCCCAGACTTCGATCACCGGAATGCAGCCACGTAGTGAGTTTAAAACCACATAAAAGAATTCAGAATGCTAGATCTATGGTCTCTTGTGCAATGAATATGAGTGCAGGACAATCAGATGATCCAGGGAGGGCGAGTTGGGATAGTTTGAAAGTCAGGGTAAAAAAACTTTGGGACAACTCACCAGAGCCAGTGAAGTGCTTCCCTTGGAATGAAGCATTGAATAACTTCATCCAGCTTATTGCTGATCTCATCTTGTCGGTTATCAAATACTTGAGCGTACCATTGCTTGTCGTCACATCTCTCAGCGAGATGTCCTACTGCGCCCATGAAAAGAAGCTTCTTATCGTCCCATTTCCATTAATAATTGGCTTCTCTGTTGCTGAGGTCATGAGACAGACAGCTTTGAGTCTATCTCCAATTCTTAAGGATCTTGAAGTACCATGGCATTTAATCACAATTGCTTTGTTCTTCACACTCATTAAACTGCCTGGCCCATACTACCCATATTGGGGACGCATATTCCTTCCCCATTTTGCAAATGGGGGTCTGTTGAGAACAGTATGGTCTATGTTTCTCTGGTTTAGAAGACCTCGAAAGACATCGATGTTGCTGAAGCAGAAAGAGAATCACCTAGATACACCGAAGAACTAA 711 43.88 MATHLQISAKMALHAPVLLAPRLRSPECSHVVSLKPHKRIQNARSMVSCAMNMSAGQSDDPGRASWDSLKVRVKKLWDNSPEPVKCFPWNEALNNFIQLIADLILSVIKYLSVPLLVVTSLSEMSYCAHEKKLLIVPFPLIIGFSVAEVMRQTALSLSPILKDLEVPWHLITIALFFTLIKLPGPYYPYWGRIFLPHFANGGLLRTVWSMFLWFRRPRKTSMLLKQKENHLDTPKN 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3251932 3255524 + Cp4.1LG04g08240.1 Cpe04g00261 467823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00261 236 PANTHER DEFECTIVE 1273 PROTEIN, PUTATIVE-RELATED 14 223 - -
Cpe04g00261 236 PANTHER DEFECTIVE 1273 PROTEIN, PUTATIVE-RELATED 14 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00261 - - - csv:101221519 403.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00261 Cpe15g00507 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00225 Cpe-Chr6:1195336 Cpe04g00261 Cpe-Chr4:3251932 1.33E-11 transposed
Cpe15g00507 Cpe-Chr15:6005483 Cpe04g00261 Cpe-Chr4:3251932 1.43E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g471 . . . . . . . . . Cmo11g01339 . . . . Sed05g2583 Cpe04g00261 Cpe15g00507 Bhi05g01156 Tan02g0877 Cmetu01g1190 . Hepe02g0563 . . Cla02g00574 Cam02g0605 Cec02g0605 Cco02g0620 Clacu02g0601 Cmu02g0599 Cre02g0929 Cone12ag1116 Cone8ag1157 . . . Csa07g00787 . Cme01g00023 . . . Bda14g00525 Bpe15g00888 . Bma03g00527 . . . . Cma11g01771 . Car11g01078 . . . . . . . . . . . . . . . . . Lsi11g01032 . Chy01g00029 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009607 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00261 Cpe_Chr04 FPKM 22.365993 19.876612 25.23205 27.526777 28.466616 28.503481 28.295483 25.688725 26.493956 24.343864