Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00274 GCCCATTGTGACCAGGTCCAGGCCCAATCCACTTCTTCATCTCCTCTGTTCATTGCTCATACAGCTGAGCCTGAACCAGAACAAGCTTGGTTTGAATTCGAATTAGCGCCAGAGCTTTCCATATTGGCGCTCACCGGAGAATCGAAGGGAACAAACTTCAGGATTGAAGGATTGTGCTGTTTGGATTCCCGGAAAATGGTGGAATCGAACCTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTTAATCTCAACAAGCTTGCCGATGCTCTGAAATCTTCCAGCACTAAATCCTCTCCGACGAAACAGCTAAAGCGTCCTCGCCAACCACACGATATCTCGTCCTTCAGTGTTAGAAGGTCCAGCCGATTTGCGGATAAACCCCCTCCGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGTAACAGAAGTTATAAAAGCGAAAATGATTGGCCTAACAGGACATATCAACGGAGAGATTTGTTGAATCGGGTTTATGCTTCACATGAAGAAAGGCAATATGCTATTGACAGAGCACGAGACCTTCAATCTAGCCTGGATTCTAGATACCCAAGTTTTGTGAAGCCAATGCTTCAATCACATGTCACCGGGGGATTTTGGCTGGGTCTTCCAGTTCAATTTTGCAAGCAACACCTTCCCCGTGAGGATGAAATGGTTATTCTGCTGGACGAGGATGGAAATGAGTTCCAAACAAAATACCTTGCCGAGAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTGCCATTGATCACCAGTTAGTAGATGGGGATGCTTTGGTGTTTCACTTAACTAAGCCAACTGAATTCAAGGTATATATCATCAGGGCGTACAATTTGGAAGACAAAGAAGATACCAATGAGGATTCCGATGATACCCAATCGGAAAAAAGTGGGCAAAGAAGTACCAGATCATCAGGGCACAAAATCATGGCAAATAATTCTGAAGATAAATCAGATAAATGCGAGGATTCCGAGGGAAGAAGTAACTCGGACATTGGCTTTGCCACATTGTTTATTAGAAGTATCCATGGCATTTTGACTAAGGAAAAACAAGGGAGCTTTCAGGTAATTGTCAGTCTTAGCTCTCTCTCTCTGGACTGTTGTAATTGTAATATCAGGTTATGTTCATGA 1182 44.42 AHCDQVQAQSTSSSPLFIAHTAEPEPEQAWFEFELAPELSILALTGESKGTNFRIEGLCCLDSRKMVESNLTYEECRRQRLEENKKRMEELNLNKLADALKSSSTKSSPTKQLKRPRQPHDISSFSVRRSSRFADKPPPNYKEVPIEPLPGNRSYKSENDWPNRTYQRRDLLNRVYASHEERQYAIDRARDLQSSLDSRYPSFVKPMLQSHVTGGFWLGLPVQFCKQHLPREDEMVILLDEDGNEFQTKYLAEKTGLSGGWRGFAIDHQLVDGDALVFHLTKPTEFKVYIIRAYNLEDKEDTNEDSDDTQSEKSGQRSTRSSGHKIMANNSEDKSDKCEDSEGRSNSDIGFATLFIRSIHGILTKEKQGSFQVIVSLSSLSLDCCNCNIRLCS 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3411573 3419388 + Cp4.1LG04g08130.1 Cpe04g00274 467836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00274 393 MobiDBLite consensus disorder prediction 327 344 - -
Cpe04g00274 393 CDD B3_DNA 201 292 IPR003340 GO:0003677
Cpe04g00274 393 MobiDBLite consensus disorder prediction 99 161 - -
Cpe04g00274 393 SUPERFAMILY DNA-binding pseudobarrel domain 196 293 IPR015300 -
Cpe04g00274 393 Gene3D - 177 295 IPR015300 -
Cpe04g00274 393 Pfam B3 DNA binding domain 203 293 IPR003340 GO:0003677
Cpe04g00274 393 MobiDBLite consensus disorder prediction 300 345 - -
Cpe04g00274 393 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 67 305 IPR044837 -
Cpe04g00274 393 SMART B3_2 203 294 IPR003340 GO:0003677
Cpe04g00274 393 ProSiteProfiles B3 DNA-binding domain profile. 203 294 IPR003340 GO:0003677
Cpe04g00274 393 Coils Coil 71 98 - -
Cpe04g00274 393 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS06G0194400 67 305 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00450 Cpe04g00274 CCT
Cpe01g00450 Cpe04g00274 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00274 Cpe-Chr4:3411573 Cpe05g01126 Cpe-Chr5:7613215 2.44E-36 dispersed
Cpe01g00450 Cpe-Chr1:2603336 Cpe04g00274 Cpe-Chr4:3411573 8.58E-44 wgd
Cpe15g00494 Cpe-Chr15:5895248 Cpe04g00274 Cpe-Chr4:3411573 2.83E-142 wgd
Cpe04g00274 Cpe-Chr4:3411573 Cpe06g00134 Cpe-Chr6:708192 2.27E-07 wgd
Cpe04g00274 Cpe-Chr4:3411573 Cpe07g00470 Cpe-Chr7:3015036 4.14E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49326 PF02362 B3 3.60E-17 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00274 - - bhj:120077841 428.713