Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00278 ATGGACTCGATATGGAGCCACACTGGCGCGCCAGACGCCTTGCATTTTGTCATCGCCGTCCAGTTCGCCTTCGGCTTTTACGCTGCGAGGTTCCTACTCGACAGATTCATTTTTCGTAGGTTTGCAATTTGGCTGTTGAGCAAAGGAGCTGCTCCACTGAAACTTGATGAGGCTACCCAGTCAAAGGTTGTAAAATGTTCGGAATCAATGTGGAAACTAGCATACTATGGCACTGTTGAAATATGCATTTTAAAAATTGCATATAATGAACCATGGTTTAGAGATTCAAATCAATACTTCAAAGGCTGGCCAAACCAGGAGTTGCAGCTTCCTCTAAAACTATTCTATATGTGCCAATGTGGGTTCTACTTATATAGCATTGCTGCTCTTCTTATATGGGAGACTCGGAGAAAGGACTTCTCTGTCATGATGTCTCATCATGTAATTACTGTTATCTTGATCGGATATTCATATATGACGAGATTTTTCCAGATTGGATCGGTTATTCTTGCACTCCATGATGCAAGTGATGTCTTCATGGAAGCTGCCAAGGTTTTTAAATATTCTGAGAAAGAACTCGGAGCAAGTGTTTTCTTTGGATTTTTTGCCGTTACATGGCTCGTATTGCGGCTTATATTCTTCCCATTCTGGGTTATAAAATCAACAAGCTATGATCTCTGTGAGTACTTGAAGCTATCAGATGCGAATTCCAGATTGATATACTATGTTTTCAACACGATGTTGTTGATGTTGCTTGTGTTCCACATATACTGGTGGTTGCTCATATGCTCCATGATCCATAGACAGCTGAAAAATAGGGGAAAAGTTGGAGAGGATATAAGATCTGATTCGGAGGATGACGATTAG 867 40.95 MDSIWSHTGAPDALHFVIAVQFAFGFYAARFLLDRFIFRRFAIWLLSKGAAPLKLDEATQSKVVKCSESMWKLAYYGTVEICILKIAYNEPWFRDSNQYFKGWPNQELQLPLKLFYMCQCGFYLYSIAALLIWETRRKDFSVMMSHHVITVILIGYSYMTRFFQIGSVILALHDASDVFMEAAKVFKYSEKELGASVFFGFFAVTWLVLRLIFFPFWVIKSTSYDLCEYLKLSDANSRLIYYVFNTMLLMLLVFHIYWWLLICSMIHRQLKNRGKVGEDIRSDSEDDD 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3444723 3451154 - Cp4.1LG04g08090.1 Cpe04g00278 467840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00278 288 PIRSF LAG1_LAC1 11 288 IPR016439 GO:0046513|GO:0050291
Cpe04g00278 288 Pfam TLC domain 65 263 IPR006634 GO:0016021
Cpe04g00278 288 PANTHER BNAA01G26210D PROTEIN 9 285 - -
Cpe04g00278 288 SMART lag1_27 64 271 IPR006634 GO:0016021
Cpe04g00278 288 PANTHER LONGEVITY ASSURANCE FACTOR 1 LAG1 9 285 IPR016439 GO:0046513|GO:0050291
Cpe04g00278 288 ProSiteProfiles TLC domain profile. 64 271 IPR006634 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00278 - - - csv:101205881 547.354
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00278 Cpe15g00490 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01901 Cpe-Chr1:16223035 Cpe04g00278 Cpe-Chr4:3444723 1.02E-84 dispersed
Cpe04g00278 Cpe-Chr4:3444723 Cpe13g00472 Cpe-Chr13:4917871 2.96E-77 dispersed
Cpe15g00490 Cpe-Chr15:5877225 Cpe04g00278 Cpe-Chr4:3444723 1.27E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g411 . Blo15g00742 Bda06g01067 Bda08g00869 Bpe07g00383 . Bma05g00516 . Cmo19g00623 Cmo11g01360 . . . . . Cpe04g00278 Cpe15g00490 Bhi05g01059 . . . . . . Cla02g00598 Cam02g0627 Cec02g0627 Cco02g0646 Clacu02g0631 Cmu02g0627 Cre02g0951 Cone12ag1092 Cone8ag1135 . . . Csa07g00763 . Cme01g00046 . . . . . . . . . . . Cma11g01753 Cma19g00605 . Car19g00459 . . . . . . . . . . . . . . . . . . Chy01g00051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006568 5 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00278 Cpe_Chr04 FPKM 1.807661 1.706619 0.15028 0.69447 0.517665 0.767601 0.776721 0.952136 0.801174 1.059205