Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00280 ATGGCTTCCACTACCGTCGCACAAGAAGATCAGAACCAAGCCGGAAGGCACCAGGAAGTCGGCCACAAGAGCCTCTTACAGAGCGATGCTCTGTATCAGTATATTCTCGAGACGAGCGTTTATCCGAGAGAGCCAGAACCGATGAAGGAATTAAGAGAATTGACTGCCAAACATCCATGGAACATCATGACGACATCGGCCGACGAAGGACAGTTCTTAAACATGCTTTTGAAGCTAATCAATGCAAAGAAGACGATGGAGATTGGAAAGAAGAATCATGGAAGTTACGACTTCATTTTTGTGGACGCTGATAAGGATAACTACATCAATTACCATAAGAGGTTGATCGATTTGGTTAAAGTTGGAGGAGTAATTGGGTACGACAACACTCTATGGAACGGGTCTGTTGTGGCCCCACCTGATGCACCAATGCGCAAGTACGTTAGGTATTATAGGGACTTCGTGCTGGAGCTCAATAAGGCTCTTGCTGCTGACCCTAGGATTGAGATCTGTATGCTCCCGGTTGGTGATGGAATTACTATCTGCCGTCGGATCAACTGA 561 46.35 MASTTVAQEDQNQAGRHQEVGHKSLLQSDALYQYILETSVYPREPEPMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKKTMEIGKKNHGSYDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIN 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3500225 3501883 - Cp4.1LG04g08040.1 Cpe04g00280 467842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00280 186 PANTHER O-METHYLTRANSFERASE-RELATED 8 89 - -
Cpe04g00280 186 MobiDBLite consensus disorder prediction 1 20 - -
Cpe04g00280 186 Pfam O-methyltransferase 91 185 IPR002935 GO:0008171
Cpe04g00280 186 Pfam O-methyltransferase 37 89 IPR002935 GO:0008171
Cpe04g00280 186 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 1 185 IPR002935 GO:0008171
Cpe04g00280 186 PANTHER CAFFEOYL-COA O-METHYLTRANSFERASE 1 8 89 - -
Cpe04g00280 186 PANTHER CAFFEOYL-COA O-METHYLTRANSFERASE 1 90 186 - -
Cpe04g00280 186 PANTHER O-METHYLTRANSFERASE-RELATED 90 186 - -
Cpe04g00280 186 Gene3D Vaccinia Virus protein VP39 14 89 IPR029063 -
Cpe04g00280 186 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 28 89 IPR029063 -
Cpe04g00280 186 Gene3D Vaccinia Virus protein VP39 90 186 IPR029063 -
Cpe04g00280 186 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 93 184 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00280 Cpe-Chr4:3500225 Cpe09g00585 Cpe-Chr9:4041929 1.67E-15 dispersed
Cpe15g00488 Cpe-Chr15:5859248 Cpe04g00280 Cpe-Chr4:3500225 1.41E-54 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00280 K00588 - sspl:121753554 310.071