Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00290 ATGGCTCAGGTTCCATCTCCACCTCAAGTTCCCGGTGCCGATCCAGCGGCCAATGGACAGCATGTCACGACGTCGTTGTATGTTGGAGATCTTGACGTCAATGTCACCGATTCGCAGCTCTATGATCTTTTTAATCAGGTGGGGCAGGTTGTTTCTGTTAGGGTTTGCAGGGATTTGACGACCCGCCGATCGCTTGGTTATGGCTATGTCAATTACAGCAGCCCTGTGGATGCAACAAGGGCATTAGATGCGCTAAACTTCACCCCTTTGAATGGAAATCCTATAAGGGTTATGTTTTCTCATCGTGACCCTAGCATGCGGAAAAGTGGGTCTGGAAATATTTTTATCAAGAATTTGGACAAGACAATTGATCACAAAGCGTTGCATGATACATTTTCTGCATTTGGAAGCATTTTATCCTGCAAGGTTGCTACGGATGCATCCGGGCAGTCTAAAGGCTTTGGCTTTGTGCAATTTGATAAGGAGGAGGCTGCCTTAAAAGCCATAGAGAAGTTGAATGGAATGCTGCTAAATGACAAGCAGGTGTTTGTGGGACCTTTCGTTCGCAAGCAAGAACGAGAAAGTGTCAGTGAGAAAACAAAGTTTAATAATGTTTTTGTTAAGAATATGTCGGAAACTACATCTGATGAAGATTTACAGAATATGTTTGAGGAGTTTGGACCAATAACCAGTGTTGTGGTGATGAGGGATGGGGATGGAAAATCCAAATGCTTTGGCTTTGTAAACTTTGAGAATGCAGACGATGCTGCGAGGTCTGTTGAAGCACTTAATGGAAAGAAGGTTGATGGGAAAGAGTGGTATGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAATTGAAAAATCGGTTTGAGCAGAGTGTAAAAGAAGCTGCTGACAAGTATCAAGGTACAAACCTATATGTTAAGAATTTAGATGATAGCATTGACGATGATAAACTGAAGGAGTTATTCTCTGCGTTTGGAACCATTACCTCATACAAGGTTATGCGAGACCCTAACGGAATGAGCAGAGGTTCTGGATTTGTTGCATTCTCAACTCCTGAAGAAGCTGCTAGAGCTCTTGGAGAGATGAATGGAAGAATAATTGTGAGCAAACCTCTCTATGTTGCACTTGCGCAGAGGAAGGAAGATAGAAGAGCGAGGTTGCAGGCACAGTTTTCCCAATTGCAGCCAATGGCAATGGCATCTTCAGTTGCACCTCGTGGCATGCCAATGTATCCTCCAGGTGCTCCGGGTATCGGACAACAAATATTCTATGGACAAGCTCCGCCTGCTATTATTTCCTCACAGCCTGGCTTTGGTTATCAGCAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCCATGCCAAATTTCTTTGTACCAATGGTTCAGCCGGGCCAGCAAGGGCAAAGATCTGGTGGCAGACGTGCTGGTGCCATTCAGCAAACCCAGCAGCCCGGTCCAATGATGCAGCAGCAGATGCTCCCACGAGGACGTGTGTACCGTTATCCTCCTGGACGTGGAATGCCTGATCTTCCCATGCCTGGAGTTGCTGGAGGTATGTTCTCTGTTCCATACGAGATGGGTGGTATGCCTCCACGGGATACTGTTCACCCTCAACCAATTCCTGTTGGTGCTTTGGCTTCTGCCCTCGCAAACGCAGCTCCAGACCATCAACGAACGATGCTGGGGGAAAATCTGTATCCACTCGTGGAACAGCTAGAGGTTGATAATGCAGCAAAGGTGACCGGAATGCTACTGGAAATGGACCAAACTGAGGTTCTGCACTTGCTCGAGTCGCCGGAGGCTCTGAAAGCCAAGGTGGCGGAGGCTATGGAGGTTTTGAGAACTGTGGGTCAGCAGACAGGCAATGCAGCAGCTGATCAATTGGCTTCACTGTCCCTGAGTGACAACCTTGATGCCTAA 1938 47.11 MAQVPSPPQVPGADPAANGQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPVDATRALDALNFTPLNGNPIRVMFSHRDPSMRKSGSGNIFIKNLDKTIDHKALHDTFSAFGSILSCKVATDASGQSKGFGFVQFDKEEAALKAIEKLNGMLLNDKQVFVGPFVRKQERESVSEKTKFNNVFVKNMSETTSDEDLQNMFEEFGPITSVVVMRDGDGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGTNLYVKNLDDSIDDDKLKELFSAFGTITSYKVMRDPNGMSRGSGFVAFSTPEEAARALGEMNGRIIVSKPLYVALAQRKEDRRARLQAQFSQLQPMAMASSVAPRGMPMYPPGAPGIGQQIFYGQAPPAIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQPGQQGQRSGGRRAGAIQQTQQPGPMMQQQMLPRGRVYRYPPGRGMPDLPMPGVAGGMFSVPYEMGGMPPRDTVHPQPIPVGALASALANAAPDHQRTMLGENLYPLVEQLEVDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRTVGQQTGNAAADQLASLSLSDNLDA 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3623251 3627301 - Cp4.1LG04g07920.1 Cpe04g00290 467852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00290 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 383 IPR000504 GO:0003723
Cpe04g00290 645 Pfam Poly-adenylate binding protein, unique domain 555 619 IPR002004 GO:0003723
Cpe04g00290 645 Gene3D - 13 113 IPR012677 -
Cpe04g00290 645 SMART poly_2 559 622 IPR002004 GO:0003723
Cpe04g00290 645 Gene3D - 290 390 IPR012677 -
Cpe04g00290 645 SUPERFAMILY RNA-binding domain, RBD 203 386 IPR035979 GO:0003676
Cpe04g00290 645 CDD RRM2_I_PABPs 110 186 IPR045305 -
Cpe04g00290 645 SMART rrm2_1 113 185 IPR003954 GO:0003676
Cpe04g00290 645 SMART rrm2_1 307 379 IPR003954 GO:0003676
Cpe04g00290 645 SMART rrm2_1 25 98 IPR003954 GO:0003676
Cpe04g00290 645 SMART rrm2_1 204 276 IPR003954 GO:0003676
Cpe04g00290 645 SMART rrm1_1 25 98 IPR000504 GO:0003723
Cpe04g00290 645 SMART rrm1_1 113 185 IPR000504 GO:0003723
Cpe04g00290 645 SMART rrm1_1 307 379 IPR000504 GO:0003723
Cpe04g00290 645 SMART rrm1_1 204 276 IPR000504 GO:0003723
Cpe04g00290 645 CDD RRM1_I_PABPs 25 104 - -
Cpe04g00290 645 SUPERFAMILY PABC (PABP) domain 488 637 IPR036053 GO:0003723
Cpe04g00290 645 Gene3D - 193 289 IPR012677 -
Cpe04g00290 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 280 IPR000504 GO:0003723
Cpe04g00290 645 Gene3D - 542 626 - -
Cpe04g00290 645 CDD RRM3_I_PABPs 202 281 - -
Cpe04g00290 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 376 IPR000504 GO:0003723
Cpe04g00290 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 181 IPR000504 GO:0003723
Cpe04g00290 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 273 IPR000504 GO:0003723
Cpe04g00290 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 96 IPR000504 GO:0003723
Cpe04g00290 645 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 25 620 IPR006515 GO:0003723
Cpe04g00290 645 PANTHER POLYADENYLATE-BINDING PROTEIN 14 629 - -
Cpe04g00290 645 SUPERFAMILY RNA-binding domain, RBD 24 193 IPR035979 GO:0003676
Cpe04g00290 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 184 IPR000504 GO:0003723
Cpe04g00290 645 PANTHER RNA BINDING PROTEIN 14 629 - -
Cpe04g00290 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 102 IPR000504 GO:0003723
Cpe04g00290 645 CDD RRM4_I_PABPs 305 383 - -
Cpe04g00290 645 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 547 624 IPR002004 GO:0003723
Cpe04g00290 645 Gene3D - 114 192 IPR012677 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00431 Cpe04g00290 CCT
Cpe04g00290 Cpe14g00289 CCT
Cpe04g00290 Cpe14g00289 ECH
Cpe01g00431 Cpe04g00290 ECH
Cpe04g00290 Cpe15g00480 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00290 Cpe-Chr4:3623251 Cpe14g00289 Cpe-Chr14:1694337 0 dispersed
Cpe15g00604 Cpe-Chr15:6753948 Cpe04g00290 Cpe-Chr4:3623251 2.95E-07 dispersed
Cpe19g00550 Cpe-Chr19:4649694 Cpe04g00290 Cpe-Chr4:3623251 3.78E-13 dispersed
Cpe08g00113 Cpe-Chr8:728182 Cpe04g00290 Cpe-Chr4:3623251 6.89E-07 transposed
Cpe01g00431 Cpe-Chr1:2489190 Cpe04g00290 Cpe-Chr4:3623251 0 wgd
Cpe15g00480 Cpe-Chr15:5807407 Cpe04g00290 Cpe-Chr4:3623251 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00290 K13126 - csv:101223017 1105.51