Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00293 ATGGCCACTCCCTCTCCTCTTCTCTTTCTCTCTCCTCTCATTTTCTTCTCTCTCTTCTCCACGCCGGCGACGCTCCGAGCCGACCCCGAACTCAAACACACCCACACTTTCTTTTCCTACTATTCTCATACCCCTCCACCGCCACCTCTACCTTACTGTGCTACGCCTCCACCACCCCCTCCACTTGTCTGCCCCACCCCATCACCGCCACCACCGCCGCCATTTAGAAGCCCAAGGATCAAAATTGCATACAATGCTATTAAGAACTTGAGACCCAGAATCGAGGATGACCCAAATAAGATCACGAAGACATGGGAAGGGAGAGACGTTTGCAGCTACAAAGGATTCATCTGTGATAAAGTTCCCGATTTCAATACCGACGCGGTGGCCGGAGTGAGCTTCAATAACTTCGGCTTTGGTGGTTCTAATCTCACTCTCAATGGCTTCATTGATCAATTGCCCGACATCACTTTCTTCCATGCTAATTCTAATAACTTCACTGGTAGAGTCCCTGATCTCAGCTACAACCTTAGATTCTTCTACGAGCTCGATCTCAGCAACAATAAATTCGTCGGCGGGTTTCCCGACCAAGTCCTCGGTGCTACCAATCTCACGTTCTTCGACATCCGGTTCAACGAATTTTACGGTCCCGTGCCCGCGAAGCTATTTGATATGGATATTATCACCGCTATCTTTCTCAACAATAATAAGTTTAATGGCGACATTCCGGCTAACCTCGGCAACACCCCTGCTAAGTACCTAACCTTCACGAACAACGAGTTCACGGGCGCAATCCCAAAAAGCCTCGGGATCGGAAAAACAAGCAACACCCTAATCGAAGTCCTATTCTCGAACAACAAGCTCACCGGCTGCATACCAATGGAGATCGGACATTTACGAAACACCATGCTATTCGACGCAAGCAAGAACTCCCTCACCGGCCCAATCCCTTACTCCTTCGGCTGCTTAGCCAAAATGGAGCTTCTCAACTTCGCCGACAACCACTTGTACGGCGCCGTTCCAGAGGTCATCTGCAAATTACCAAAGCTCCAAAGCCTCACCCTCCGCAACAACTTCTTCACCCAACTCGGCCCCGTCTGCCGGAGCTTGATCTGGAAGAAGGCTCTAGACGTTTCTGGAAACTGCATTATGGGTCTGCCGGAGCAGAGATCGGAGGAGGAATGCACCCATTTCTTCACCAATGTTCAGAGCTGTCACGATGAGAAGTCGATGAAGTACATCCCTTGTATGGGGAATTGGTACTTGAATGAAGATCCGGCAGCCGTACTCCGTCGGCCGGCGAGAAAGACGACGGAGATGAGAACGTATGCGGCTCTTGTTCCCCATTAA 1350 50.3 MATPSPLLFLSPLIFFSLFSTPATLRADPELKHTHTFFSYYSHTPPPPPLPYCATPPPPPPLVCPTPSPPPPPPFRSPRIKIAYNAIKNLRPRIEDDPNKITKTWEGRDVCSYKGFICDKVPDFNTDAVAGVSFNNFGFGGSNLTLNGFIDQLPDITFFHANSNNFTGRVPDLSYNLRFFYELDLSNNKFVGGFPDQVLGATNLTFFDIRFNEFYGPVPAKLFDMDIITAIFLNNNKFNGDIPANLGNTPAKYLTFTNNEFTGAIPKSLGIGKTSNTLIEVLFSNNKLTGCIPMEIGHLRNTMLFDASKNSLTGPIPYSFGCLAKMELLNFADNHLYGAVPEVICKLPKLQSLTLRNNFFTQLGPVCRSLIWKKALDVSGNCIMGLPEQRSEEECTHFFTNVQSCHDEKSMKYIPCMGNWYLNEDPAAVLRRPARKTTEMRTYAALVPH 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3655511 3657849 + Cp4.1LG04g07950.1 Cpe04g00293 467855

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00293 449 PANTHER BNAC05G26270D PROTEIN 57 446 - -
Cpe04g00293 449 SUPERFAMILY Formin homology 2 domain (FH2 domain) 56 61 - -
Cpe04g00293 449 Gene3D Ribonuclease Inhibitor 84 250 IPR032675 -
Cpe04g00293 449 Gene3D Ribonuclease Inhibitor 251 415 IPR032675 -
Cpe04g00293 449 SUPERFAMILY L domain-like 98 385 - -
Cpe04g00293 449 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 57 446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00293 - - - cpep:111792803 779.245
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00293 Cpe15g00477 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00293 Cpe-Chr4:3655511 Cpe15g00478 Cpe-Chr15:5769119 0 dispersed
Cpe01g00429 Cpe-Chr1:2476975 Cpe04g00293 Cpe-Chr4:3655511 3.85E-133 wgd
Cpe11g00139 Cpe-Chr11:748770 Cpe04g00293 Cpe-Chr4:3655511 8.46E-111 wgd
Cpe15g00477 Cpe-Chr15:5767108 Cpe04g00293 Cpe-Chr4:3655511 1.47E-171 wgd
Cpe02g00193 Cpe-Chr2:1005771 Cpe04g00293 Cpe-Chr4:3655511 3.44E-94 wgd
Cpe04g00293 Cpe-Chr4:3655511 Cpe07g00496 Cpe-Chr7:3241893 7.03E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g378 Blo02g00837 . . . . Bpe12g00047 . . Cmo19g00607 Cmo11g01379 . . . . . Cpe04g00293 Cpe15g00477 Bhi05g01086 . . . . . . Cla02g00623 Cam02g0657 Cec02g0660 Cco02g0683 Clacu02g0665 Cmu02g0660 Cre02g0978 . Cone8ag1115 Cone3ag0990 Cone10ag1008 . Csa07g00736 . Cme01g00072 . . . . . . . Bma08g00812 . . . . Cma19g00588 . Car19g00446 . . . . . . . . . . . . . . . . . . Chy01g00078 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000853 1 2 2 1 2 3 4 3 3 3 3 3 5 3 3 5 3 6 4 3 3 2 1 4 4 4 2 4 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00293 Cpe_Chr04 FPKM 6.988006 8.214927 68.081497 71.779053 208.083939 236.48526 208.732986 1.188851 0.900964 0.477953