Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00295 ATGGCGATTTCCACCACTTTCTCCTTCTCCATCGTCGTTTTTCTAGCGCTGTTCCTATGTTTTTCCTCATCTTCATCGGCTTCTGATTCGTCCAGCTTTTCAATCATCGATGAAAACGCTAAACACCACTTGGATATCCAAATCGGATCCTCGCAGCGCTCCGATGAGGAGGTTGCGGCTCTGTACGAGTCGTGGTTGGTTCATAATGGAAAGGCTTACAACGCTCTTGGCGAGAAGGAGAGGCGATTTGAGATTTTCAAGGATAATCTCAGGTTCATTGATGAACATAACAGGGAATCGCGGAGTTATAAGATTGGATTGAACCGTTTTGCCGATCTCTCCAACGAGGAGTATCGCGCCATGTTTCTTAGCGGTCGATTGTCACGAAAGAACCGCCTCTCCGCAACTAAGAGTCGGAGATATGCGATCGCGCTCGGCGATGATCTGCCGGATCATGTTGATTGGAGGAAGAAGGGCGCTGTTACGGATGTTAAAGATCAAGGACAGTGTGGGAGCTGTTGGGCTTTCTCAACAGTTGCTGCAGTGGAAGGAATAAATCAAATCACCACCGGTGAATTGATCTCTCTGTCGGAGCAGGAGCTTGTAGACTGTGATAGATCATATAACATGGGGTGCAATGGTGGTCTTATGGACTATGCTTTCCAGTTCATCATTGACAATGGTGGAATTGACACTGAGGAAGATTACCCTTACAAGGGCAGAGATGGCACTTGCGATCCCATCCGGAAAAATGCTAAAGCTGTAACCATAGATGGATATGAAGATGTTCCTGAGAATGATGAGAGCTCCTTGAAAAAGGCTGTGGCTAATCAACCTGTTAGTGTTGCCATTGAAGCTGGCGGCAGGGCCTTCCAACTTTACCAATCGGGTGTCTTCAACGGACTTTGTGGAACTGAACTGGATCATGGTGTTGTTGCTGTTGGATATGGCACAGAAGATGGAAAAGATTATTGGATTGTGAGGAACTCATGGGGTAAAAACTGGGGAGAGAATGGTTATATCAAGTTGGAGAGGAATGTAGGCAACATTACCACAGGCAAGTGTGGTATAGCCATAGAGGCTTCATACCCCACCAAGACAGGAAAGAACCCACCAAAACCTGCCCCTTCTCCGCCATCCCCTGTGAGTCCCCCGAATCAATGCGACGAATACTTCTCGTGCCAGGAAGGCACTACCTGTTGCTGTATCTATAAGTATGGAAGTACCTGCTTTGGTTGGGGATGCTGCCCGCTCGAGTCTGCCACCTGTTGCGACGACCATTACAGTTGCTGCCCCCATGAATACCCCATCTGTGACCTTGATGCAGGAACTTGCCTGAAGAGCAAAGGCAGCACGACCGGAGTCGAACTGCTGAAGCGCGTTCCTGCTAAATATAACAGGGGCTGCGTTCAGAAGCTTGGCAAGATGTCCACTGGTGCTTGA 1443 48.44 MAISTTFSFSIVVFLALFLCFSSSSSASDSSSFSIIDENAKHHLDIQIGSSQRSDEEVAALYESWLVHNGKAYNALGEKERRFEIFKDNLRFIDEHNRESRSYKIGLNRFADLSNEEYRAMFLSGRLSRKNRLSATKSRRYAIALGDDLPDHVDWRKKGAVTDVKDQGQCGSCWAFSTVAAVEGINQITTGELISLSEQELVDCDRSYNMGCNGGLMDYAFQFIIDNGGIDTEEDYPYKGRDGTCDPIRKNAKAVTIDGYEDVPENDESSLKKAVANQPVSVAIEAGGRAFQLYQSGVFNGLCGTELDHGVVAVGYGTEDGKDYWIVRNSWGKNWGENGYIKLERNVGNITTGKCGIAIEASYPTKTGKNPPKPAPSPPSPVSPPNQCDEYFSCQEGTTCCCIYKYGSTCFGWGCCPLESATCCDDHYSCCPHEYPICDLDAGTCLKSKGSTTGVELLKRVPAKYNRGCVQKLGKMSTGA 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3733287 3736173 + Cp4.1LG04g07890.1 Cpe04g00295 467857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00295 480 SUPERFAMILY Cysteine proteinases 54 365 IPR038765 -
Cpe04g00295 480 SUPERFAMILY Granulin repeat 385 419 - -
Cpe04g00295 480 Pfam Cathepsin propeptide inhibitor domain (I29) 62 118 IPR013201 -
Cpe04g00295 480 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 307 317 IPR025660 -
Cpe04g00295 480 SMART GRAN_2 388 445 IPR000118 -
Cpe04g00295 480 Pfam Granulin 399 446 IPR000118 -
Cpe04g00295 480 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 167 178 IPR000169 -
Cpe04g00295 480 CDD Peptidase_C1A 150 364 IPR039417 -
Cpe04g00295 480 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 42 394 - -
Cpe04g00295 480 PANTHER CYSTEINE PROTEASE 42 394 - -
Cpe04g00295 480 SMART pept_c1 149 365 IPR000668 GO:0006508|GO:0008234
Cpe04g00295 480 Gene3D Granulin 385 448 IPR037277 -
Cpe04g00295 480 PRINTS Papain cysteine protease (C1) family signature 167 182 IPR000668 GO:0006508|GO:0008234
Cpe04g00295 480 PRINTS Papain cysteine protease (C1) family signature 309 319 IPR000668 GO:0006508|GO:0008234
Cpe04g00295 480 PRINTS Papain cysteine protease (C1) family signature 324 330 IPR000668 GO:0006508|GO:0008234
Cpe04g00295 480 Pfam Papain family cysteine protease 149 365 IPR000668 GO:0006508|GO:0008234
Cpe04g00295 480 Gene3D Cysteine proteinases 27 367 - -
Cpe04g00295 480 SMART Inhibitor_I29_2 62 118 IPR013201 -
Cpe04g00295 480 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 324 343 IPR025661 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00295 K25900 RD21; cysteine proteinase RD21 [EC:3.4.22.-] - csv:101222543 777.704
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00295 Cpe05g01328 CCT
Cpe04g00295 Cpe15g00476 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00017 Cpe-Chr2:102283 Cpe04g00295 Cpe-Chr4:3733287 8.67E-127 dispersed
Cpe04g00295 Cpe-Chr4:3733287 Cpe10g00449 Cpe-Chr10:2627482 3.79E-169 dispersed
Cpe07g00033 Cpe-Chr7:173426 Cpe04g00295 Cpe-Chr4:3733287 1.71E-99 dispersed
Cpe18g00319 Cpe-Chr18:4706602 Cpe04g00295 Cpe-Chr4:3733287 2.70E-77 dispersed
Cpe07g00393 Cpe-Chr7:2540050 Cpe04g00295 Cpe-Chr4:3733287 5.34E-145 transposed
Cpe15g00476 Cpe-Chr15:5754029 Cpe04g00295 Cpe-Chr4:3733287 7.05E-65 wgd
Cpe19g00637 Cpe-Chr19:5160213 Cpe04g00295 Cpe-Chr4:3733287 7.14E-170 wgd
Cpe02g00195 Cpe-Chr2:1015211 Cpe04g00295 Cpe-Chr4:3733287 0 wgd
Cpe04g00295 Cpe-Chr4:3733287 Cpe06g00176 Cpe-Chr6:956019 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g328 . . . . . Bpe12g00163 . . . Cmo11g01384 Cma02g00311 Cma20g00695 Car02g00192 . . Cpe04g00295 . Bhi05g01087 . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . . . . Csa07g00228 . Cme01g00073 Blo04g00616 Blo13g00456 . . Bpe15g00768 . Bma03g00653 Bma08g00825 . Cmo02g00305 Cmo20g00687 . . . . . Cpe05g01328 . . . . . . . Cla02g01045 Cam02g1113 Cec02g1118 Cco02g1152 Clacu02g1099 Cmu02g1059 Cre02g1367 Lsi11g01321 . Chy01g00080 Cme11g01011
Vvi3g605 . . . . . Bpe12g00293 . . Cmo19g00605 . . . . . . Cpe04g00295 Cpe15g00476 . . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . Cone3ag0991 Cone10ag1012 Lsi03g00521 Csa07g00735 . Cme01g00073 . . Bda15g00848 Bda14g01450 . . Bma03g01355 Bma08g00518 . . . Cma11g01732 . Car11g01109 Car19g00445 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001585 7 2 1 3 5 2 3 1 2 1 1 1 2 2 2 1 0 5 4 2 2 2 2 2 2 1 2 5 3 3 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00295 Cpe_Chr04 FPKM 14.349835 16.575161 9.070895 9.485297 17.816099 15.624362 16.303221 3.846152 3.519122 3.641123