Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00296 ATGGATCCAAAATCTACTGATTCCCCACCGTCACCTACTGTTCATTCCTCGGCTACTAAATTTCCAGAAGTACATCCTCAGGCTCCTGCTTCCTCTGGAATGGATAATGTGGCACGTGAGGCACCATCTAAGCTATCTTCTTCTGGCATAACTTCGTGGGCTAAGAACTTGAAAATTTCTCAACCACAGTCAGCTTCACCAGATGGCACGACTGAAAATGCTGGGAAGTCAGCGTTTGCTCGTTTTACTAGTGGCTTAGGTTTGAATTTATCTCCAAAATCTGCTGCACCTAATGATTCCCCAGATGCCTCTTCTAAACCTGCCCAACCCAGTTTGGTTGGATCAATTACAAGAGGGTTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTTCAAGTTAAAGCGCGTCATGTTGTCTCCCAAAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGACATGACTTATATTACTGAAAATATCATTGCAATGGGTTTCCCTGCGGGTGACATGAGCTCAGGGTTTTTTGGATATGTTGAGGGTTTCTACAGAAACCATATGGAAGAAGTCATTAAGTTCTTTGAAACACATCACAAGGGAAAATACAAAGTATACAATCTTTGTTCCGAGAGGCTATATGATGCGTCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCGGTTCAACTGATAATATCATTTTGCCAAAGTGCGTATTCATGGTTGAAGGATGATATCGAAAATGTTGTGGTTGTGCATTGCAAGGCAGGAATGGCCCGGACAGGCTTGATGATTTCCAGTCTTCTTCTGTTTCTGAAGTTCTTTCCAACAGCTGAAGAATCTATTGAATACTACAACCAGAGAAGGTGTTTCGATGGAAAAGGCCTGGTCTTACCAAGTCAGATTAGGTATGTCAAATATTTCGAGCGTATTTTAACCTACTTCAATGGAGAAAATCCTCCTGGCCGCAGTTGTGTACTTAGAGGGTTTCGTCTCCACAGATGTCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCCACTAAAACACATCAAAGAACCAAGAATCTGTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGATAATGGTATTCGCCTTACCCGGGGAGCCTGGTCTAGCTGAGTTGTGCGGGGACTTCAAGGTTCATTTCCATGATCGCCAAGGAGATTTCTATTGTTGGCTAAACACAACCATGACCGAAAATCGGAAAATGCTCTACACTAATGATCTTGATGGGTTCGACAAGAGAAAACTGCCTTCCCCTGGATTTCAGGTGGAGGTTGTTCTAGTAGATATGTTGCCGAATGTGGACAATACGACCAAGAAATCAGATGAAAGCTCAGGCTCGAAATCTTCTGCAGTTGATGGGAGTGAGGTTTCTGATAACCAAAACAGAAAATCAGTAACTAATGAGAAAGATGATGTATTTTCTGACAGTGAATCAGAAGGTGGTTCTGCAAAGAGCAAGGATGCAGCATCAGGTTCAGGGTCTGAAGCGTCAGCTGTCAAGACGACATCTAAATCTCAAACGAGTGCGACTTCATCCGACGATGTTGCGAGTTTATCACATGCGACAAAGCAAGTTTCCCTGGGAGATGGTGGAGCTAAACAGGCTGCTCCAGCAGCCAGTGACCGAAAAGGCGATGGAGTCAAAAGATCTGATTCCCTCTCAGAAATTCCAAATTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGGGACGATGAAGACTACGAGAGTGAGTAA 1839 43.45 MDPKSTDSPPSPTVHSSATKFPEVHPQAPASSGMDNVAREAPSKLSSSGITSWAKNLKISQPQSASPDGTTENAGKSAFARFTSGLGLNLSPKSAAPNDSPDASSKPAQPSLVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLVLPSQIRYVKYFERILTYFNGENPPGRSCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKTHQRTKNLSPEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLVDMLPNVDNTTKKSDESSGSKSSAVDGSEVSDNQNRKSVTNEKDDVFSDSESEGGSAKSKDAASGSGSEASAVKTTSKSQTSATSSDDVASLSHATKQVSLGDGGAKQAAPAASDRKGDGVKRSDSLSEIPNSESEFKAMAADASVFTFGDDEDYESE 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3737062 3742686 + Cp4.1LG04g07880.1 Cpe04g00296 467858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00296 612 MobiDBLite consensus disorder prediction 511 552 - -
Cpe04g00296 612 MobiDBLite consensus disorder prediction 41 75 - -
Cpe04g00296 612 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 15 612 - -
Cpe04g00296 612 MobiDBLite consensus disorder prediction 1 20 - -
Cpe04g00296 612 ProSiteProfiles C2 tensin-type domain profile. 330 457 IPR014020 -
Cpe04g00296 612 ProSitePatterns Tyrosine specific protein phosphatases active site. 260 270 IPR016130 GO:0016311|GO:0016791
Cpe04g00296 612 MobiDBLite consensus disorder prediction 1 75 - -
Cpe04g00296 612 CDD PTP_PTEN 154 319 IPR045101 GO:0016791
Cpe04g00296 612 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 258 297 IPR000387 GO:0016311|GO:0016791
Cpe04g00296 612 ProSiteProfiles Phosphatase tensin-type domain profile. 144 323 IPR029023 -
Cpe04g00296 612 MobiDBLite consensus disorder prediction 462 597 - -
Cpe04g00296 612 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 15 612 - -
Cpe04g00296 612 MobiDBLite consensus disorder prediction 462 489 - -
Cpe04g00296 612 SMART PTEN_C2_2 328 456 IPR014020 -
Cpe04g00296 612 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 157 324 IPR029021 -
Cpe04g00296 612 MobiDBLite consensus disorder prediction 90 111 - -
Cpe04g00296 612 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 350 454 IPR035892 -
Cpe04g00296 612 MobiDBLite consensus disorder prediction 490 510 - -
Cpe04g00296 612 Gene3D Protein tyrosine phosphatase superfamily 129 326 IPR029021 -
Cpe04g00296 612 Gene3D - 337 458 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00296 Cpe15g00475 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00296 Cpe-Chr4:3737062 Cpe06g00297 Cpe-Chr6:1626314 1.20E-06 dispersed
Cpe03g00496 Cpe-Chr3:2914342 Cpe04g00296 Cpe-Chr4:3737062 1.27E-45 transposed
Cpe04g00171 Cpe-Chr4:1679284 Cpe04g00296 Cpe-Chr4:3737062 3.99E-47 transposed
Cpe15g00475 Cpe-Chr15:5747188 Cpe04g00296 Cpe-Chr4:3737062 0 wgd
Cpe19g00640 Cpe-Chr19:5169575 Cpe04g00296 Cpe-Chr4:3737062 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00296 K01110 - csv:101222304 1061.21