Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00299 ATATTTTTGGGTCGAGTCTATTCACTGGCAGACCGGACCGGGTCGGGAGCCATGGAAGGGGCATCGTACCAGCGCTTTCCCAAGGTGAAGATCCGAGAGCTCAGAGATGACTATGCCAAATTCGAGCTCCATGACACTGATGTTAGCATGGCCAACGCCCTCCGTCGCGTCATGATCGCTGAGGTCCCCACCATCGCCATCGACCTGGTAGAAATTGAAGTGAACTCCTCAGTTCTTAACGATGAGTTCATCGCCCATCGCCTTGGTCTCATTCCCCTCACTAGCGAGCGTGCCATGTCTATGCGCTTCTCTCGCGACTGTGATGCTTGTGATGGTGATGGCCAGTGCGAGTTTTGCTCTGTCGAGTTTCACCTTCGTGCCAAGTGCCACTCTGACCAAACCCTAGACGTCTCCAGCAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCTGTTGATTTCTCTGATTCTGCAGCAGCTGCTGGTGAAGCGCTTGATACCAAAGGAATAATCATTGTGAAGCTACGTCGGGGTCAAGAATTGAGGTTGAGAGCCATAGCCAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTGCAGCAACTGTGACATTCATGTATGAACCAAGCATTCACATCAATGAAGACCTAATGGAAACATTAACACTCGAGGAAAAGACTTCCTGGGTTGAAAGTAGCCCAACCAAAGTCTTTGAATTGGATCCTGTTACCCACCAGGTTCTGGTGGTTGATCCAGAGGCATACACTTATGATGATGAAGTGATTAAGAAAGCAGAAGCAATGGGTAAAGCTGGACTAGTGGATATCACTGCAAAAGAAGATAGTTTTATCTTCACAGTTGAATCTACCGGTGCAATAAAAGCTTCCCAGTTGATACTCAATGCCATAGATATTCTGAAACAGAAACTGGATGCAGTCCGCCTTTCAGACGATACTGTAGAAGCAGATGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGCTGTCAAAAAGATGCTCAAAATTTTGTCTGA 1038 47.4 IFLGRVYSLADRTGSGAMEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVSSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRGCQKDAQNFV 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3771645 3780826 - Cp4.1LG04g07860.1 Cpe04g00299 467861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00299 345 ProSitePatterns RNA polymerases D / 30 to 40 Kd subunits signature. 52 92 IPR001514 GO:0003677|GO:0003899|GO:0006351
Cpe04g00299 345 SMART rpoldneu2 38 317 IPR011263 GO:0003899|GO:0006351
Cpe04g00299 345 PANTHER BNAA09G08480D PROTEIN 20 334 - -
Cpe04g00299 345 Gene3D - 64 196 IPR036643 -
Cpe04g00299 345 SUPERFAMILY RBP11-like subunits of RNA polymerase 27 319 IPR036603 GO:0006351|GO:0046983
Cpe04g00299 345 CDD RNAP_II_RPB3 27 320 - -
Cpe04g00299 345 Pfam RNA polymerase Rpb3/RpoA insert domain 70 199 IPR011262 GO:0003899|GO:0006351|GO:0046983
Cpe04g00299 345 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 63 200 IPR036643 -
Cpe04g00299 345 Hamap DNA-directed RNA polymerase subunit Rpo3 [rpo3]. 28 318 IPR022842 GO:0003899|GO:0006351
Cpe04g00299 345 Gene3D - 29 310 IPR036603 GO:0006351|GO:0046983
Cpe04g00299 345 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 40 311 IPR011263 GO:0003899|GO:0006351
Cpe04g00299 345 PANTHER DNA-DIRECTED RNA POLYMERASE 20 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00299 K03011 RPB3, POLR2C; DNA-directed RNA polymerase II subunit RPB3 - csv:101218763 608.216
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00299 Cpe-Chr4:3771645 Cpe08g00841 Cpe-Chr8:6679996 3.18E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g610 . . . . . Bpe12g00297 . . . Cmo11g01387 . . . . . Cpe04g00299 . . . . . . . . . . . . . . . . Cone8ag1113 . . . . . . . . Bda15g00845 . . . . . . . . . . Car11g01113 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009530 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00299 Cpe_Chr04 FPKM 2.688579 2.374975 5.833326 5.7271 10.061433 10.145288 11.622692 10.319198 9.640414 10.207546