Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00301 ATGACAATCTTTTCTCTCCTCCTCCTCCTCCTCCTCCTCTCTCTCTCCTCCCTCGCTCATTCTCTCACCTCCCTCTCCGATCTCTCCGCCCTCAAAGCCTTCAAATCCGCCGTCAAACCCTCTTCCATCCCCCCTTGGTCCTGTCTCGCCTCCTGGAATTTCTCCGTCGATCCCTGCGCCCTCCCCCGTCGCACCTCCTTCTCCTGCGGCCTCCTCTGCAATCCCGCCGCCACTCGCATAACCCAACTCACCCTCGATCCCGCCGGCTATTCCGGCACTCTCTCCCCACTTCTCTCTCGCCTCACTCAATTAACGGTTCTCGACCTCGCCGACAACTCCTTCTCCGGTCTCATCCCCTCTGCCATTTCCTCTCTCCCCAATCTCCAAATCCTCATTCTCCGTTCCAATTCCTTCACCGGAGTGATCCCACCTTCAATTTCCAACCTTAAATCCCTCGAATCCTTGGATCTCTCTCACAATTCCCTCGCCGGAAATCTCCCCAAATCTCTGGTTTTCCTCTCTGCTTTACGACGCCTCGATCTCAGCTTCAATCGACTCACCGGCTCCATTCCAAAACTCCCGCCGAACTTACTCGAACTCGCTTTAAAACGAAATTCCCTTTCTGGGTATTTGGAGAAATCGTCTTTTGTCGAGTCGACTCAATTGGAGGTCATCGAACTCAGTGAAAACTCGCTCGCCGGAACCTTGCCGCCTTGGTTCTTCCTCCTCCCATCCGTCCAGCAGATTAATTTGGCTAATAACAGCCTGACGCGTGTCGAGATCTCCCCTGCTGCCGCTACGGGTAGTGACCTCGTCGCCGTCGATTTGGGGTTCAATAGAATCGAGGGGAACGTACCGGTGAATTTCGCGAGCTATCCGGCGCTGTCGGCGCTGTCGCTCCGGTACAATCGGTTACGTGGGACGATCCCATTGGAGTTCAGCCAGATGAAGACGATGAAGAGGTTGTACTTGGATGGGAACTTTCTGACGGGGAAGCCGCCGGCAGAGTTCTTCTTCGGCGGCGATCCGGTCTCCGGTAGCTTGGGGGATAATTGTCTGCAGGGATGTCCACAGTCGTCTCAGCTGTGCGCTCCGTCGCAGAAGCCGAACGCTGTTTGCAAGGAAGCGTACGGAAGCGGGAGGGGAAAAGGAAAACCGATGACCTGA 1167 55.53 MTIFSLLLLLLLLSLSSLAHSLTSLSDLSALKAFKSAVKPSSIPPWSCLASWNFSVDPCALPRRTSFSCGLLCNPAATRITQLTLDPAGYSGTLSPLLSRLTQLTVLDLADNSFSGLIPSAISSLPNLQILILRSNSFTGVIPPSISNLKSLESLDLSHNSLAGNLPKSLVFLSALRRLDLSFNRLTGSIPKLPPNLLELALKRNSLSGYLEKSSFVESTQLEVIELSENSLAGTLPPWFFLLPSVQQINLANNSLTRVEISPAAATGSDLVAVDLGFNRIEGNVPVNFASYPALSALSLRYNRLRGTIPLEFSQMKTMKRLYLDGNFLTGKPPAEFFFGGDPVSGSLGDNCLQGCPQSSQLCAPSQKPNAVCKEAYGSGRGKGKPMT 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3788710 3789876 + Cp4.1LG04g07820.1 Cpe04g00301 467863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00301 388 PRINTS Leucine-rich repeat signature 104 117 - -
Cpe04g00301 388 PRINTS Leucine-rich repeat signature 149 162 - -
Cpe04g00301 388 SMART LRR_typ_2 125 148 IPR003591 -
Cpe04g00301 388 SMART LRR_typ_2 149 172 IPR003591 -
Cpe04g00301 388 SMART LRR_typ_2 243 268 IPR003591 -
Cpe04g00301 388 SMART LRR_typ_2 173 200 IPR003591 -
Cpe04g00301 388 SMART LRR_typ_2 101 124 IPR003591 -
Cpe04g00301 388 Gene3D Ribonuclease Inhibitor 194 363 IPR032675 -
Cpe04g00301 388 ProSiteProfiles Leucine-rich repeat profile. 175 197 IPR001611 GO:0005515
Cpe04g00301 388 Gene3D Ribonuclease Inhibitor 23 193 IPR032675 -
Cpe04g00301 388 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 6 382 - -
Cpe04g00301 388 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 6 382 - -
Cpe04g00301 388 SUPERFAMILY L domain-like 68 342 - -
Cpe04g00301 388 Pfam Leucine rich repeat 195 256 IPR001611 GO:0005515
Cpe04g00301 388 Pfam Leucine rich repeat 126 186 IPR001611 GO:0005515
Cpe04g00301 388 Pfam Leucine Rich Repeat 320 337 IPR001611 GO:0005515
Cpe04g00301 388 Pfam Leucine Rich Repeat 103 125 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00301 - - - cmo:103495265 644.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00301 Cpe15g00471 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00673 Cpe-Chr1:3936583 Cpe04g00301 Cpe-Chr4:3788710 1.05E-06 dispersed
Cpe04g00301 Cpe-Chr4:3788710 Cpe14g00551 Cpe-Chr14:3496809 2.01E-67 dispersed
Cpe15g00471 Cpe-Chr15:5726752 Cpe04g00301 Cpe-Chr4:3788710 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g614 . Blo03g00087 . . . Bpe12g00298 . . Cmo19g00600 Cmo11g01389 . . . . . Cpe04g00301 Cpe15g00471 . . . . . . . Cla02g00630 Cam02g0664 Cec02g0668 Cco02g0692 Clacu02g0672 Cmu02g0666 Cre02g0985 . Cone8ag1111 Cone3ag0994 Cone10ag1015 Lsi03g00527 Csa07g00728 . Cme01g00080 . . Bda15g00844 . . . . Bma08g00506 . . . Cma11g01726 . Car11g01115 . . . Bhi11g01177 . . . . . . . . . . . . . . . Chy01g00086 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008155 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00301 Cpe_Chr04 FPKM 1.687029 1.447602 4.618917 5.880736 3.71993 3.610981 3.932436 4.778457 5.322708 4.78153