Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00309 ATGGACGCGTCGGAGTACCTCAAGCCCTCCGTCCGAACTTCGAAGAAGCGCGACTTAGAGGATCATTCTCTGCAACTGGCCTCCGCCAATAAGAGAGTGGCGCTTGGCGAGATCACCAACTCGTTGATCTTCAATACCAGACAGTGCTCGCTTTCTGATCAGGAGATGACGGATAAGGATATGGACGAGGAGGAACGTCCCGATGGAATCTCTGTTGATTGTTCTAAAAAGTGTCGTTCTGCATCTAGCATCTATAACCACCTTCGATCTCTGGAGATGGAACTGCACATGAAGGTACTGCCCAATAACATCGTAAAGGCTCAAAATGGTGATTCCATTTTAAGTTTCACTTATATGCGAGAAATTCTTGTGGATTGGTTAGTAGAGGTTGCTGAAGAATACAAGCTTGTATCGGACACCCTATATCTCACTATATCACATATGGACATATACTTATCCTCGCAAGCTGTTGACAAAAGCAAGCTGCAGCTTCTTGGTGTTTGTTGCATGCTTCTTGCATCAAAGTATGAAGAGATCAATCCTCCAAATGTTGAAGACTTCTGCTATATAACAGACAATACATATACCAAAGAACAGGTATTGAGTATGGAGAGAGAAGTACGCAAATTCTTGAGCTGTGAAGGTGCCCCCACCATAAAAAATTTTCTCAGGCAAGAATGCTCTTCAACTATCTTATATTTAGTACCTAAAAACATATATTTCTTCTTTTCTCTATATGCGATTAACTCATTGTTGCCCTCTTACAGAATATTCACAAAAGTTTCTTTGGAAAATTGGAAGGCTCCAGACTTGCAATTCGAGTTTTTGAGTTGTTACCTTGCGGAGCTAAGTTTGTTAGATCACCGTTTTGTACAGTTCTTACCATCAATGGTCGCTGCATCAGCTATTTTTCTTTCTAGATTCACAATTCAACCAGATGAACATCCTTGGTGTTTAGCGTTGCAACATTACTCCGGTTACAGACCATCTGAACTGAAGGAATGCATTCTTGCCATTCATCGCTTGCAATTAAATAGAAAAGGAAGCTCTTTACAAGCAATAAGAACCAAGTATAAGCAGCATAAGTTCAAGTGTGTGGCCGAGTTATCTTCTCCCTCAGAAATTCCTGCATATTACTTTGAGGACATTGACAAGCAATCATTCAACAGGTTCTTGAGAACTTAA 1185 40.84 MDASEYLKPSVRTSKKRDLEDHSLQLASANKRVALGEITNSLIFNTRQCSLSDQEMTDKDMDEEERPDGISVDCSKKCRSASSIYNHLRSLEMELHMKVLPNNIVKAQNGDSILSFTYMREILVDWLVEVAEEYKLVSDTLYLTISHMDIYLSSQAVDKSKLQLLGVCCMLLASKYEEINPPNVEDFCYITDNTYTKEQVLSMEREVRKFLSCEGAPTIKNFLRQECSSTILYLVPKNIYFFFSLYAINSLLPSYRIFTKVSLENWKAPDLQFEFLSCYLAELSLLDHRFVQFLPSMVAASAIFLSRFTIQPDEHPWCLALQHYSGYRPSELKECILAIHRLQLNRKGSSLQAIRTKYKQHKFKCVAELSSPSEIPAYYFEDIDKQSFNRFLRT 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3874502 3877931 - Cp4.1LG04g07790.1 Cpe04g00309 467871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00309 394 PIRSF Cyclin_A_B_D_E 253 379 IPR039361 -
Cpe04g00309 394 PIRSF Cyclin_A_B_D_E 3 242 IPR039361 -
Cpe04g00309 394 PANTHER CYCLINS 26 225 IPR039361 -
Cpe04g00309 394 PANTHER CYCLINS 256 382 IPR039361 -
Cpe04g00309 394 PANTHER CYCLIN-A3-1-LIKE 256 382 - -
Cpe04g00309 394 PANTHER CYCLIN-A3-1-LIKE 26 225 - -
Cpe04g00309 394 CDD CYCLIN 119 207 IPR013763 -
Cpe04g00309 394 SMART Cyclin_C_2 217 372 IPR004367 -
Cpe04g00309 394 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 327 394 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe04g00309 394 SMART cyclin_7 255 341 IPR013763 -
Cpe04g00309 394 SMART cyclin_7 125 209 IPR013763 -
Cpe04g00309 394 Pfam Cyclin, C-terminal domain 267 371 IPR004367 -
Cpe04g00309 394 CDD CYCLIN 270 340 IPR013763 -
Cpe04g00309 394 Gene3D - 97 215 - -
Cpe04g00309 394 SUPERFAMILY Cyclin-like 268 373 IPR036915 -
Cpe04g00309 394 Pfam Cyclin, N-terminal domain 84 211 IPR006671 -
Cpe04g00309 394 Gene3D - 84 368 - -
Cpe04g00309 394 SUPERFAMILY Cyclin-like 83 213 IPR036915 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00309 K06627 CCNA; cyclin-A - csv:101213896 562.377
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00309 Cpe15g00455 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00309 Cpe-Chr4:3874502 Cpe12g00714 Cpe-Chr12:6723254 1.51E-78 dispersed
Cpe11g00133 Cpe-Chr11:725289 Cpe04g00309 Cpe-Chr4:3874502 3.83E-96 wgd
Cpe15g00455 Cpe-Chr15:5624271 Cpe04g00309 Cpe-Chr4:3874502 2.52E-68 wgd
Cpe02g00206 Cpe-Chr2:1058884 Cpe04g00309 Cpe-Chr4:3874502 9.26E-103 wgd
Cpe04g00309 Cpe-Chr4:3874502 Cpe06g00185 Cpe-Chr6:995417 1.07E-102 wgd
Cpe04g00309 Cpe-Chr4:3874502 Cpe07g00503 Cpe-Chr7:3300135 1.26E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g655 . . . . . . . . Cmo19g00580 Cmo11g01399 . . . . . Cpe04g00309 Cpe15g00455 Bhi05g01057 Tan02g1772 . Lac12g0195 . . . Cla02g00659 Cam02g0694 Cec02g0707 Cco02g0726 Clacu02g0700 Cmu02g0698 Cre02g1013 . . . . Lsi03g00554 Csa07g00705 . Cme01g00101 . . . . . . . . . . . Cma11g01716 Cma19g00567 Car11g01125 Car19g00427 . . . . . . . . . . . . . . . . . . Chy01g00109 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012970 0 2 0 0 0 1 2 1 1 0 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00309 Cpe_Chr04 FPKM 8.555555 4.990895 2.466181 2.250095 11.315267 13.121805 7.595079 2.484151 3.237507 2.684844