Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00310 ATGGCAACCTTCACCTCTTCTCTCTCGCTCCCTCTGCAACTCCGGCCCTCCTCATCACGCTCTCCTCGCCAATTTTCTTCTCCCCCACCCTCGCTTTCCTTCCCTCTTATTCGTTCCTCCTCTAAATTCCCCTGCCGATTCTCAGCCCTAACCATCTCCTCCTCTTTGGACTCCTCCTCCGATGACTTCGATCATGGCAAGCACTCGAATCCGCCATTTTCATCCAAGAAATCAGTTCTCTCATCTTTGATACAAGAGATAGAGCCATTAGATGTAAGCATAATTCAAAAAGATGTTCCACCGACCACTGTGGATGCTATGAAAAGGACTATCTCTGGCATGCTGGGCTTACTTCCATCTGACCAGTTTCAAGTTTTGGTTGAGGCTTTATGGGAACCAGTTTCTAAGTTATTAGTTTCTTCAATAATGACTGGGTACACATTGCGTAATGCTGAATATAGACTCTGCCTTGAAAGAAATCTTGACTTTGATGATGGAAATAACGACAAACAAACAAATGATGATTGTAGAGTTGATCTACATGAAATATTGCTTGACAGTGCTAATTCGGAGAACATTTTAGATGAAAATGAGGCTTCTTCCAAATGCGAGGAATTTTTGGATGAACCGTATGAAAACCTTAATATTCAAGGCATTGGTGAAACTTCTCCTGAAGTTCAACAGCATATTCTTCATTTAAAGTTACAATTATCTTCAATTAAAAAGGAACTCCATGAAGTCAAGAGAAAAAGTGCTGCTCTTCAGATGCAGCAGTTTGTTGGCGAGGAGAAAAATGATCTGTTGGACTATCTGCGATCATTACAGCCAGAAAAGGTGGCTGAGCTCTCTGAACCTACATCCCCTGATTTAAAAGAAGCCATACATTCTGTTGTCCACGGACTTCTTGCAACCCTTTCCCCAAAGATTCATTCCAAAGTTCCTTCTCAATCAGAAAATATTGGAACGGGCACGACAGATATTGGTAATGAAGATTGTGCAGAACTTGTTGAGAATACTTCTCTCCAATTCCAGCCCCTCTTAACATTAACACGAGACTACCTGGCTCGTCTACTTTTCTGGTGTATGCTGTTGGGGCATTACATGAGAGGCCTGGAATACAGGATGGAGTTGATGAACCTTCTTTCCCTTTCAAGCAATGTTGAAAATGCTTCAGGTGGCGTGACCAGTGATGACTTTTCTTCATAG 1206 42.29 MATFTSSLSLPLQLRPSSSRSPRQFSSPPPSLSFPLIRSSSKFPCRFSALTISSSLDSSSDDFDHGKHSNPPFSSKKSVLSSLIQEIEPLDVSIIQKDVPPTTVDAMKRTISGMLGLLPSDQFQVLVEALWEPVSKLLVSSIMTGYTLRNAEYRLCLERNLDFDDGNNDKQTNDDCRVDLHEILLDSANSENILDENEASSKCEEFLDEPYENLNIQGIGETSPEVQQHILHLKLQLSSIKKELHEVKRKSAALQMQQFVGEEKNDLLDYLRSLQPEKVAELSEPTSPDLKEAIHSVVHGLLATLSPKIHSKVPSQSENIGTGTTDIGNEDCAELVENTSLQFQPLLTLTRDYLARLLFWCMLLGHYMRGLEYRMELMNLLSLSSNVENASGGVTSDDFSS 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3882383 3887731 + Cp4.1LG04g07700.1 Cpe04g00310 467872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00310 401 MobiDBLite consensus disorder prediction 1 32 - -
Cpe04g00310 401 Pfam Protein of unknown function (DUF760) 80 161 IPR008479 -
Cpe04g00310 401 Pfam Protein of unknown function (DUF760) 266 381 IPR008479 -
Cpe04g00310 401 Coils Coil 230 257 - -
Cpe04g00310 401 MobiDBLite consensus disorder prediction 57 76 - -
Cpe04g00310 401 PANTHER MAR-BINDING FILAMENT-LIKE PROTEIN 45 392 - -
Cpe04g00310 401 PANTHER OS02G0833400 PROTEIN 45 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00310 - - - cmax:111486037 699.123
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00086 Cpe-Chr4:805784 Cpe04g00310 Cpe-Chr4:3882383 2.01E-47 dispersed
Cpe04g00310 Cpe-Chr4:3882383 Cpe11g00796 Cpe-Chr11:6433955 1.11E-21 dispersed
Cpe04g00310 Cpe-Chr4:3882383 Cpe03g00538 Cpe-Chr3:3151781 3.79E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g661 . . . . . Bpe12g00302 . . . Cmo11g01400 . . . . Sed06g0592 Cpe04g00310 . Bhi05g01055 Tan02g0996 Cmetu04g1635 Lac12g0194 . . . Cla02g00660 Cam02g0695 Cec02g0708 Cco02g0727 Clacu02g0701 Cmu02g0699 Cre02g1014 . . . . Lsi03g00555 Csa07g00704 . Cme01g00102 . . Bda15g00839 . . . . Bma08g00458 . . . Cma11g01715 . Car11g01126 . . . . . . . . . . . . . . . . . . . Chy01g00110 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009529 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00310 Cpe_Chr04 FPKM 32.261673 38.732052 23.362545 23.251909 26.718149 27.821764 28.113489 28.739365 26.14217 27.207642