Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00313 ATGGCTTTCGTCTCCACCTTCATCTCCGGCGAACTGTCGCTCCTCACAGTCAGAGCCTCCGCCACCCCCTCCTCCGTCAAGCATCCCTATCAATTCCCTCCGTCTAATTTGCACTTCGCCCGCACTGTTACCTTCGCTTCTACCTCCAACCAGGCCACTGCCTCCCAACGCCAGCCCCGAGGTATCATGAAGCCCAAGCGGATTTCTCCGGAGATGCAGGCGCTTGTCGGTGTTCCCGAGATTTCCCGTACCCAAGCCCTTAAGGTCATTTGGGCTCACATTAAAGAGCATAATCTTCAGAAACCGAGCGACAAAAAAGTCATAATCTGCGACGAGAAGCTGAAGAACATATTCGGAGGGAAAGATGAAGTTGGGTTTCTGGAGATTGCAGGATTGATAAGTCCCCACTTTCTAAAATGA 420 51.9 MAFVSTFISGELSLLTVRASATPSSVKHPYQFPPSNLHFARTVTFASTSNQATASQRQPRGIMKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFLK 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3917138 3919709 + Cp4.1LG04g07720.1 Cpe04g00313 467875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00313 139 PANTHER EXPRESSED PROTEIN-RELATED 13 138 - -
Cpe04g00313 139 SMART swib_2 62 139 IPR019835 -
Cpe04g00313 139 SUPERFAMILY SWIB/MDM2 domain 56 139 IPR036885 -
Cpe04g00313 139 CDD SWIB-MDM2_like 67 137 - -
Cpe04g00313 139 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 13 138 - -
Cpe04g00313 139 Pfam SWIB/MDM2 domain 65 137 IPR003121 -
Cpe04g00313 139 ProSiteProfiles SWIB/MDM2 domain profile. 61 139 IPR003121 -
Cpe04g00313 139 Gene3D SWIB/MDM2 domain 56 139 IPR036885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00313 - - - cmo:103495293 204.142
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00313 Cpe15g00452 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01666 Cpe-Chr3:12728014 Cpe04g00313 Cpe-Chr4:3917138 2.55E-26 dispersed
Cpe04g00313 Cpe-Chr4:3917138 Cpe08g00471 Cpe-Chr8:3019225 2.43E-27 dispersed
Cpe15g00452 Cpe-Chr15:5612241 Cpe04g00313 Cpe-Chr4:3917138 4.42E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g668 Blo02g00939 Blo03g00081 . . Bpe07g00266 . . Bma12g00272 . Cmo11g01405 . . . . . Cpe04g00313 Cpe15g00452 . . . . . . . . . . . . . . Cone12ag1057 Cone8ag1091 . . . Csa07g00700 . Cme01g00106 . . . . . Bpe05g00483 . . . . . Cma11g01711 Cma19g00564 Car11g01130 Car19g00424 . . . . . . . . . . . . . . . . . . Chy01g00116 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007982 0 1 2 2 2 1 2 1 1 1 0 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 0 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49328 PF02201 SWIB 1.90E-27 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00313 Cpe_Chr04 FPKM 0.0 0.0 0.0 0.0 0.898267 0.634013 1.156308 0.0 0.0 0.0