Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00316 ATGGCTATCTATCGAAGAATGTTGGATGCTGGGTTCGCTCCCGATCTGCTGATGTACAATACCGTTTTAGCAGCCTTGGCTCGGGGAGGCCTTTGGGAGCAGTCGGAGATAGTGCTCGCCGAAATGAAGAACGGTCGGTGTAAACCTAATGAGTTAACGTATTGTTCTTTACTTCATGCTTATGCCAATGGCAAAGAGATCCGGCGGATGTCTGCACTTGCTGAGGAAATCTATGCCAGCATTATTGAACCTCAAGCTGTGCTTTTGAAGACATTGGTTTTGGTTTATAGTAAAAGGGATCTTTTGATGGAGACCGAGCGTGCTTTCTTCGAACTTAGGAAGCACGGTTTTTCGCCTGATTTAAGGACTCTAAATGCCATGGTTTCGATCTATGGTTGGAGAAGGATGGTTTTGAAAACGAATGAAATTTTAAACTTCATGAAGGATAGCGGTTATACTCCGAGCTTGACTACTTATAATAGCCTAATGTACATGTACAGTCGCTCGGAGAACTTAGACAAGTCGGAGGAGATTTTGAGGGAAATTATTGAGAAAGGAATAAAGCCTGATATCATTTTGTTTAATACCGTAATTTTCGCCTATTGTCGGAATGGTCAAATGAAAGAGGCGTCGAGGATATTTGCTGAAATGAAGGATTTCGGGCTTGTCCCAAACGTAATTACGTATAATGCCTTCAATGCAAGCTATTCTGCTGACTCGATGTTTGTAGAGGCGATTGATGTGGTGAGCTATACGATCAAGAATGGATGTAAGCCTAATCCGAACACATACAACTCTCTAGTAGACTCGTTTTGTAAACTAAATCACTGGGAGGATGCAAATAGTTTCGTCTCAAACCTTTGCAATCTCAACCCACACATAACGAAAGAAGAGAAACGCAGGTTGCTGAAGCATATAAAGCAAGAAAAGAAATGGTCATAG 942 41.93 MAIYRRMLDAGFAPDLLMYNTVLAALARGGLWEQSEIVLAEMKNGRCKPNELTYCSLLHAYANGKEIRRMSALAEEIYASIIEPQAVLLKTLVLVYSKRDLLMETERAFFELRKHGFSPDLRTLNAMVSIYGWRRMVLKTNEILNFMKDSGYTPSLTTYNSLMYMYSRSENLDKSEEILREIIEKGIKPDIILFNTVIFAYCRNGQMKEASRIFAEMKDFGLVPNVITYNAFNASYSADSMFVEAIDVVSYTIKNGCKPNPNTYNSLVDSFCKLNHWEDANSFVSNLCNLNPHITKEEKRRLLKHIKQEKKWS 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3921315 3922256 + Cp4.1LG04g07730.1 Cpe04g00316 467878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00316 313 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Cpe04g00316 313 Pfam PPR repeat family 14 63 IPR002885 -
Cpe04g00316 313 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 120 154 IPR002885 -
Cpe04g00316 313 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 3 231 - -
Cpe04g00316 313 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 136 286 - -
Cpe04g00316 313 PANTHER OS06G0111300 PROTEIN 3 231 - -
Cpe04g00316 313 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Cpe04g00316 313 Pfam PPR repeat 255 282 IPR002885 -
Cpe04g00316 313 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Cpe04g00316 313 PANTHER OS06G0111300 PROTEIN 136 286 - -
Cpe04g00316 313 Pfam Pentatricopeptide repeat domain 111 166 IPR002885 -
Cpe04g00316 313 Pfam Pentatricopeptide repeat domain 178 231 IPR002885 -
Cpe04g00316 313 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 15 49 IPR002885 -
Cpe04g00316 313 Gene3D Tetratricopeptide repeat domain 99 313 IPR011990 GO:0005515
Cpe04g00316 313 Gene3D Tetratricopeptide repeat domain 1 98 IPR011990 GO:0005515
Cpe04g00316 313 TIGRFAM PPR: pentatricopeptide repeat domain 193 226 IPR002885 -
Cpe04g00316 313 TIGRFAM PPR: pentatricopeptide repeat domain 263 283 IPR002885 -
Cpe04g00316 313 TIGRFAM PPR: pentatricopeptide repeat domain 18 51 IPR002885 -
Cpe04g00316 313 TIGRFAM PPR: pentatricopeptide repeat domain 158 191 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00316 - - - csv:101213418 505.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00316 Cpe-Chr4:3921315 Cpe07g00738 Cpe-Chr7:6352856 1.77E-18 dispersed
Cpe04g00316 Cpe-Chr4:3921315 Cpe15g00451 Cpe-Chr15:5608901 2.42E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g669 . . . . . . . . . Cmo11g01407 . . . . . Cpe04g00316 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma11g01710 . Car11g01132 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029601 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00316 Cpe_Chr04 FPKM 3.601199 4.47635 5.472816 3.134516 0.544163 0.678422 0.0 0.0 0.0 0.0