Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00332 ATGAGCTCCATCGGCCAAAACATCCTGATGGCTCTCGCCCTCACTCTAAACCAATTCGCTTCCTCAAACGTTCAATCCGTCCAGAGAAACAAACCCAAAACGCCACCCACCACCACCGCCACCACCTCCGCCTCCACCTTCGCCAGTTCTGACATCCAACGAAGAGGCCTCCTCTTATCTGCCGCCGTTGCCGCCGCCGTGGACTCCAGAACCGAGCTCCTAAAAAGGTACCTCAAGAAATCCGAAGAAAACAAAGAAAAGAACGACAAGGAGAGATTGGAGAGTTTCTACAAGCGAAATTACAAAGATTATTTTGAGTTTGTTGAAGGATCTTTGAAGAACAAGGATGAACTTTCTGAAGCTGAGAAAGGTATCATTGAATGGCTTAAGAGAAACAAATAA 402 47.01 MSSIGQNILMALALTLNQFASSNVQSVQRNKPKTPPTTTATTSASTFASSDIQRRGLLLSAAVAAAVDSRTELLKRYLKKSEENKEKNDKERLESFYKRNYKDYFEFVEGSLKNKDELSEAEKGIIEWLKRNK 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4075090 4075934 - Cp4.1LG04g07370.1 Cpe04g00332 467894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00332 133 Coils Coil 74 94 - -
Cpe04g00332 133 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 49 95 IPR008796 GO:0009522|GO:0015979
Cpe04g00332 133 MobiDBLite consensus disorder prediction 25 46 - -
Cpe04g00332 133 PANTHER UNNAMED PRODUCT 15 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00332 - - - bhj:120077574 173.326
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g727 . Blo03g00065 Bda06g01176 . Bpe07g00287 . . Bma12g00294 . Cmo11g01426 . . . . Sed05g2635 Cpe04g00332 . Bhi05g01014 Tan02g1036 Cmetu01g1272 Lac12g0154 Hepe02g0660 . . . . . . . . . . . . Cone10ag1055 . Csa07g00674 . Cme01g00131 . . . . . . . . . . . Cma11g01694 . Car11g01149 . . . . . . . . . . . . . . . . . . . Chy01g00141 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009808 2 1 1 2 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00332 Cpe_Chr04 FPKM 9.054187 7.836822 1.253379 1.392539 19.447588 17.424568 18.913025 0.527647 0.29811 0.208172