Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00337 ATGGATGTATTCAAGATTTTCTTCGCTCTCATTTGCGTTTCGGGATTGTTTTTAGTTAAGCCATCTCTCGCTCAAAACTCACCTAAGGACTATCTCAATGCCCACAATGCAGCTCGCAAAATGGTTGGCGTTGGACCATTGTTTTGGGACCGAAAACTAGCAGCCTATGCTCAAAGCTATGCTAATAAACGCATGCGTGACTGTAAGCTAGTGCTCTCGGGTGGCCCGTATGGCGAGAACCTTGCATGGAGTAGCGATCGTAGCCTCACAGGCGTCGGGGCAGTGAAGCTATGGGTTAGCAAGAAGGGATTCTACAATTACAGGTCCAATAAATGTGTTGGTGATCAGAGTTGTCTAGCATACACTCAGGTGGTTTGGAGACGTTCGAAGAAGCTGGGATGTGCTAGAGTTAAGTGCACCAATGGTGGTACTTTTGTGATTTGCAGCTACAGCCCTCGAGGCAACATTTCTTCTCAACGGCCATATTAA 489 46.83 MDVFKIFFALICVSGLFLVKPSLAQNSPKDYLNAHNAARKMVGVGPLFWDRKLAAYAQSYANKRMRDCKLVLSGGPYGENLAWSSDRSLTGVGAVKLWVSKKGFYNYRSNKCVGDQSCLAYTQVVWRRSKKLGCARVKCTNGGTFVICSYSPRGNISSQRPY 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4106885 4107373 + Cp4.1LG04g07480.1 Cpe04g00337 467899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00337 162 Gene3D CAP 25 162 IPR035940 -
Cpe04g00337 162 ProSitePatterns CRISP family signature 2. 145 156 IPR018244 GO:0005576
Cpe04g00337 162 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 19 162 IPR001283 -
Cpe04g00337 162 PANTHER PATHOGENESIS-RELATED PROTEIN 1 19 162 - -
Cpe04g00337 162 CDD CAP_PR-1 28 162 - -
Cpe04g00337 162 SUPERFAMILY PR-1-like 8 162 IPR035940 -
Cpe04g00337 162 Pfam Cysteine-rich secretory protein family 32 150 IPR014044 -
Cpe04g00337 162 SMART SCP_3 26 158 IPR014044 -
Cpe04g00337 162 PRINTS Allergen V5/Tpx-1 family signature 47 65 IPR001283 -
Cpe04g00337 162 PRINTS Allergen V5/Tpx-1 family signature 94 107 IPR001283 -
Cpe04g00337 162 PRINTS Allergen V5/Tpx-1 family signature 118 134 IPR001283 -
Cpe04g00337 162 PRINTS Allergen V5/Tpx-1 family signature 145 158 IPR001283 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00337 K13449 PR1; pathogenesis-related protein 1 - csin:114307248 209.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00337 Cpe15g00421 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00337 Cpe-Chr4:4106885 Cpe15g00425 Cpe-Chr15:5386033 2.86E-65 dispersed
Cpe16g00013 Cpe-Chr16:173883 Cpe04g00337 Cpe-Chr4:4106885 5.90E-37 dispersed
Cpe04g00336 Cpe-Chr4:4095712 Cpe04g00337 Cpe-Chr4:4106885 1.49E-60 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g795 . . Bda06g01147 . Bpe07g00299 . . Bma12g00311 Cmo19g00542 . . . . . . Cpe04g00337 Cpe15g00421 . . . . . . . Cla02g00708 Cam02g0744 Cec02g0756 Cco02g0783 Clacu02g0751 Cmu02g0745 Cre02g1060 Cone12ag1024 Cone8ag1057 . . Lsi03g00624 Csa07g00662 . Cme01g00141 . . . . . . . . . . . . Cma19g00533 . . . . . . . . . . . . . . . . . . . . Chy01g00152 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023758 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00337 Cpe_Chr04 FPKM 8.852578 10.016247 5.200156 6.100743 4.603083 3.780382 5.092465 0.0 0.0 0.172463