Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00340 ATGTCAAGGAGGCCAGTAAATCCTTCTCGACGTCTTGTTGATGGTGGGAGTCTTCCGTTTGTCGGTGTAATACAGTCCAAGTCACGCTCATCACCTTTGCTGACCATAGGGCTTGTTGTGAATCTTTCCCTTGGTATCACCACCATCACCATCAATCTTTCAGTATTGCAACAAATTGACAGCTGCTTGTCATCATATTCTTATTTTGGCCACACTCTGCTGGAAATGTCGTCTTTCGACTCAAAGAGTGGATCAAGAAGCAATATAGAGGCTGTGAGTAAATTTGAAGGTGGAAATTCATGCACAGCAGAAATCCAACGAGCAATACCCATTCTAAAGAAAGCGTATGGAGATAGCATGCATAAAGTATTGCATCTAGGTCCTGATACTTGTTCAGTGGTGTCTAAATTGTTAAAAGAAGAGGATACAGAAGCATGGGGTGTGGAGCCCTATGACTTGGAAGATGCTGATGCCAGTTGCAGAAGCCTTGTGCGGAAGGGCTTTGTGCGCGCTGCTGACATTAAGTTTCCCCTGCCATATAGAGCAAAGTCATTTTCTCTTGTCATTGTTTCAGATGCATTGGATTACTTGTCTCCCAGATACCTTAACAGCACTCTTCCAGAACTGGCCAGGGTTTCTGCTGACGGCATCGTTATATTTACCGGTTATCCAGGTCAACAGAAGGCTAAAGCTTCGGATTTATCCAAATTTGGCCGTCCAGCGAAATTGCGAAGCTCGTCGTGGTGGATTAGGTTTTTTGTTCAGACAAGTTTAGAAGAGAATGAAGGTGCTGTAAAGAAGTTTGATCAGGCTGCAACTAAGAGGTCGTACAGGCCAGCTTGCCAAGTCTTCCACCTCAAATCATACTCTTGA 873 44.33 MSRRPVNPSRRLVDGGSLPFVGVIQSKSRSSPLLTIGLVVNLSLGITTITINLSVLQQIDSCLSSYSYFGHTLLEMSSFDSKSGSRSNIEAVSKFEGGNSCTAEIQRAIPILKKAYGDSMHKVLHLGPDTCSVVSKLLKEEDTEAWGVEPYDLEDADASCRSLVRKGFVRAADIKFPLPYRAKSFSLVIVSDALDYLSPRYLNSTLPELARVSADGIVIFTGYPGQQKAKASDLSKFGRPAKLRSSSWWIRFFVQTSLEENEGAVKKFDQAATKRSYRPACQVFHLKSYS 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4119368 4125029 - Cp4.1LG04g07440.1 Cpe04g00340 467902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00340 290 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 1 41 IPR044689 GO:0008168|GO:0045488
Cpe04g00340 290 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 74 289 IPR044689 GO:0008168|GO:0045488
Cpe04g00340 290 Gene3D Vaccinia Virus protein VP39 93 274 IPR029063 -
Cpe04g00340 290 PANTHER - 1 41 - -
Cpe04g00340 290 PANTHER - 74 289 - -
Cpe04g00340 290 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 226 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00340 K23871 CGR; putative pectin methylesterase [EC:2.1.1.-] - csv:101210824 426.017
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00378 Cpe04g00340 CCT
Cpe04g00340 Cpe15g00414 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00340 Cpe-Chr4:4119368 Cpe10g00503 Cpe-Chr10:2949031 6.56E-123 dispersed
Cpe01g00378 Cpe-Chr1:2185955 Cpe04g00340 Cpe-Chr4:4119368 1.47E-64 wgd
Cpe15g00414 Cpe-Chr15:5293125 Cpe04g00340 Cpe-Chr4:4119368 2.38E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g808 . . . . . Bpe12g00729 . . Cmo19g00531 Cmo11g01435 . . . . Sed14g0958 Cpe04g00340 Cpe15g00414 Bhi05g00998 Tan02g1073 Cmetu10g0686 Lac12g0133 Hepe02g0670 . . Cla02g00720 Cam02g0766 Cec02g0764 Cco02g0793 Clacu02g0762 Cmu02g0755 Cre02g1069 Cone12ag1020 Cone8ag1050 . . Lsi03g00637 Csa07g00655 . Cme01g00148 . . Bda15g00472 . . . . Bma08g00021 Sed07g1157 Cmo04g00451 . Cma11g01687 Cma19g00518 Car11g01153 Car19g00393 . Cpe01g00378 Bhi11g01089 Tan01g0592 Cmetu07g2246 . . Mch10g0397 . . . . . . . . . . Chy01g00157 Cme07g02223
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000838 3 2 2 3 2 2 4 2 2 2 2 2 3 2 3 4 2 4 4 2 3 3 2 2 2 2 2 13 4 2 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00340 Cpe_Chr04 FPKM 1.245098 1.082082 0.0 0.412731 2.130903 2.782389 1.467228 1.02977 0.420828 1.368288