Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00361 ATGTTGCAGTTTTCGATTCGGCGAGTGAGGAAATTGAATGTTCTGAGGCCTCAGATCTTTGCTCTTGGCAATTCTCGATTCTCCACTTCTCCTGAACCGTCTTCCAAGCCTAATCCTCCGAGAGTTCCTAATCTTATAGGAGGGAACTTTGTTGATTCCCGATCCTCAGCGTTCATAGATGTCATAAATCCAGCGACCCAAGAAGTTGTTTCTCAAGTTCCATTAACCACAAATGAAGAATTTAAAGCTGCAGTATCTGCAGCAAAGCAGGCTTTTCCTGCATGGCGTAATACCCCAGTCACAACTCGCCAAAGAGTTATGCTCAAGCTTCAAGAACTTATCAGGCGAGATATTGACAAACTTGCTCTAAATATTACCACAGAACAAGGAAAAACATTAAAGGATGCGCATGGAGATGTATTCCGGGGGCTAGAGGTTGTGGAACATGCATGTGGAATGGCTTCTCTGCAAATGGGGGAATATGTCTCTAATGTTTCACATGGAATTGATACGTACAGCATCAGAGAGCCTCTAGGCGTTTGTGCTGGGATTTGTCCATTCAATTTTCCAGCCATGATTCCCCTATGGATGTTTCCAATTGCTGTTACATGTGGGAATACCTTTGTCTTGAAGCCTTCAGAAAAAGATCCAGGGGCTTCTATAATCCTTGCAGAGTTAGCAATGGAGGCTGGATTGCCTAATGGTGTCCTAAATGTGGTTCATGGTACTAATGATGTTGTTAATGCCATTTGTGATGATGAAGATATAAAAGCAATATCATTTGTTGGTTCAAACATTTCCAATATGGGGGCAAAAAATCATGCAATTGTCTTGCCTGATGCCAACATAGATGCTACTTTGAATGCTTTGGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCACTCAGTACAGTTGTCTTTGTTGGAGACTCCAAATTGTGGGAGGATAAACTTGTAGAACGTGCCAAAACTCTGAAGGTAAGTTCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGAGAGGATTCACAGATTAGTTCAATCTGGCATCGATAGTGGAGCCAGGCTACTGCTAGATGGGAGAGATATAGTGAGATTTAGTAGGCAGAGATGGCGGGCATGCATATATTTTCAAGGGGATCAGCTAAAGGAAAACGTGTTCAGGCAATCCAATATGGGGGCAAAAAATCATGCAATTGTCTTGCCTGATGCCAACATAGATGCTACTTTGAATGCTTTGGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCACTCAGTACAGTTGTCTTTGTTGGAGACTCCAAATTGTGGGAGGATAAACTTGTAGAACGTGCCAAAACTCTGAAGGTAAGTTCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGAGAGGATTCACAGATTAGTTCAATCTGGCATCGATAGTGGAGCCAGGCTACTGCTAGATGGGAGAGATATAGTGGTTCCTGGATATGAGCATGGAAATTTTATTGGCCCTACTGTCTTAACAGACGTGACGCCTGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGCAGGCTGAAAGTTTTGAGGAGGCCATTAGCATCGTTAACAGAAATAGGTATGGCAATGGAGCTTCCATATTCACCGAATCTGGCATAGCAGCGAGGAAGTTTCAAACTGAAATTGAAGCTGGACAGTTGGCAACTTCTATGCAGTTGGAGGATAAACTTGTAGAACGTGCCAAAACTCTGAAGGTAAGTTCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGAGAGGATTCACAGATTAGTTCAATCTGGCATCGATAGTGGAGCCAGGCTACTGCTAGATGGGAGAGATATAGTGGTTCCTGGATATGAGCATGGAAATTTTATTGGCCCTACTGTCTTAACAGACGTGACGCCTGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGCAGGCTGAAAGTTTTGAGGAGGCCATTAGCATCGTTAACAGAAATAGGTACTGGATTGTCGGAATCAACGTTCCAATCCCCGTTCCCTTACCCTTCTTCTCGTTCACTGGCTCCAAGGCATCTTTCGCCGGGGATCTCAACTTTTACGGGAAGGCAGGGGTTAATTTCTTCACTCAGATCAAAACAGTTACACAACAATGGAAAGAATCAGGTGGGGGAAGTGCCGTCAACCTTGCAATGCCAACCTCTTTGAAGTCATAG 2322 44.27 MLQFSIRRVRKLNVLRPQIFALGNSRFSTSPEPSSKPNPPRVPNLIGGNFVDSRSSAFIDVINPATQEVVSQVPLTTNEEFKAAVSAAKQAFPAWRNTPVTTRQRVMLKLQELIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGASIILAELAMEAGLPNGVLNVVHGTNDVVNAICDDEDIKAISFVGSNISNMGAKNHAIVLPDANIDATLNALVAAGFGAAGQRCMALSTVVFVGDSKLWEDKLVERAKTLKVSSGTEPDADLGPVISKQAKERIHRLVQSGIDSGARLLLDGRDIVRFSRQRWRACIYFQGDQLKENVFRQSNMGAKNHAIVLPDANIDATLNALVAAGFGAAGQRCMALSTVVFVGDSKLWEDKLVERAKTLKVSSGTEPDADLGPVISKQAKERIHRLVQSGIDSGARLLLDGRDIVVPGYEHGNFIGPTVLTDVTPDMECYKEEIFGPVLLCMQAESFEEAISIVNRNRYGNGASIFTESGIAARKFQTEIEAGQLATSMQLEDKLVERAKTLKVSSGTEPDADLGPVISKQAKERIHRLVQSGIDSGARLLLDGRDIVVPGYEHGNFIGPTVLTDVTPDMECYKEEIFGPVLLCMQAESFEEAISIVNRNRYWIVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFFTQIKTVTQQWKESGGGSAVNLAMPTSLKS 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4234773 4246355 + Cp4.1LG04g07270.1 Cpe04g00361 467923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00361 773 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 589 704 IPR010061 GO:0004491
Cpe04g00361 773 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 706 770 IPR010061 GO:0004491
Cpe04g00361 773 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 399 586 IPR010061 GO:0004491
Cpe04g00361 773 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 706 770 - -
Cpe04g00361 773 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 13 374 - -
Cpe04g00361 773 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 589 704 - -
Cpe04g00361 773 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 399 586 - -
Cpe04g00361 773 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 295 306 IPR016160 GO:0016491
Cpe04g00361 773 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 44 373 IPR010061 GO:0004491
Cpe04g00361 773 SUPERFAMILY ALDH-like 593 755 IPR016161 GO:0016491
Cpe04g00361 773 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 428 439 IPR016160 GO:0016491
Cpe04g00361 773 SUPERFAMILY ALDH-like 38 374 IPR016161 GO:0016491
Cpe04g00361 773 Pfam Aldehyde dehydrogenase family 593 704 IPR015590 GO:0016491
Cpe04g00361 773 Pfam Aldehyde dehydrogenase family 50 371 IPR015590 GO:0016491
Cpe04g00361 773 Pfam Aldehyde dehydrogenase family 401 588 IPR015590 GO:0016491
Cpe04g00361 773 SUPERFAMILY ALDH-like 401 587 IPR016161 GO:0016491
Cpe04g00361 773 CDD ALDH_F6_MMSDH 42 754 IPR010061 GO:0004491
Cpe04g00361 773 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 13 374 IPR010061 GO:0004491
Cpe04g00361 773 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 591 757 IPR016163 GO:0016620
Cpe04g00361 773 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 272 398 IPR016163 GO:0016620
Cpe04g00361 773 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 403 590 IPR016163 GO:0016620
Cpe04g00361 773 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 26 271 IPR016162 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00361 Cpe-Chr4:4234773 Cpe04g01139 Cpe-Chr4:9800137 1.98E-10 dispersed
Cpe07g00985 Cpe-Chr7:8924751 Cpe04g00361 Cpe-Chr4:4234773 1.41E-20 dispersed
Cpe10g00532 Cpe-Chr10:3113643 Cpe04g00361 Cpe-Chr4:4234773 4.32E-52 transposed
Cpe15g00387 Cpe-Chr15:5089964 Cpe04g00361 Cpe-Chr4:4234773 3.70E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00361 K00140 - csv:101204924 674.085