Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00363 ATGCCGGACTCCAATTTCCAAGACGTGATGTACGGTTCCGGAGTCATGAACAACGTTGCCCAGGATTTGGATAACGTTCAGACTCAAGTTGGCGATGAAGACGACAACGTTACCGGCCGGGAAGAATCCATCGACAACCCGCAGATGCGCTTTGAAGACTCCGGGGAGATGAGCGGCTCGGTCTCAGCGATGAACCGAGTCCAGGATATTGTTCCTTCGGCGTATATTTCCAGCTCTGATTACAACCCTTTGATTGGAAACGGTGGTGCCGATCAGCTCACGCTGTCATTCAGAGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTACTTTTGCTTTTAGGTGGATATGAAGTTCCTTCTGGTATTCCTGCTGTTGGAAGTGTTCCTGTCAATCAACAGGGTGCTGATGGCTTTCCTGTCAGGTCGGCGCAACCGCAAAGAGCTGCTTCATTGAGTAGGTTTCGAGAGAAGAGGAAAGAAAGGTGTTTCGGGAAGAAAATCCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCATCTAAAGCTAGTGCAGATGAAGTGGGCTCATCTTCAGTCTTGGCTCTAACTTTGGATTCTGGTCAAGATGATGGCTTGTTGGAAACTTCATGCACACATTGTGGAGTGAGTTCAAAATCTACCCCAATGATGCGTCGAGGACCAGCAGGCCCGAGGACTCTGTGCAACGCATGTGGGCTGAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCAACCGCTGGCATTCAGGAGCCCTCTGTGAAGGAGACTGAACAGAGCGACGGTGAAGCCAACGAGTCCGATGCTGCTATAAACGTGGATGCCCTCGCTTCTAATGGTGGTAAATAG 921 49.84 MPDSNFQDVMYGSGVMNNVAQDLDNVQTQVGDEDDNVTGREESIDNPQMRFEDSGEMSGSVSAMNRVQDIVPSAYISSSDYNPLIGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEVPSGIPAVGSVPVNQQGADGFPVRSAQPQRAASLSRFREKRKERCFGKKIRYNVRKEVALRMQRKKGQFISSKASADEVGSSSVLALTLDSGQDDGLLETSCTHCGVSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSTAGIQEPSVKETEQSDGEANESDAAINVDALASNGGK 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4272010 4277634 - Cp4.1LG04g07180.1 Cpe04g00363 467925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00363 306 PANTHER GATA TRANSCRIPTION FACTOR 18 1 297 - -
Cpe04g00363 306 SMART tify_2 86 121 IPR010399 -
Cpe04g00363 306 SMART GATA_3 219 273 IPR000679 GO:0006355|GO:0043565
Cpe04g00363 306 Pfam tify domain 90 120 IPR010399 -
Cpe04g00363 306 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Cpe04g00363 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 270 - -
Cpe04g00363 306 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355|GO:0043565
Cpe04g00363 306 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355|GO:0043565
Cpe04g00363 306 Gene3D - 221 280 IPR013088 GO:0006355|GO:0008270
Cpe04g00363 306 CDD ZnF_GATA 224 274 IPR000679 GO:0006355|GO:0043565
Cpe04g00363 306 Pfam CCT motif 153 195 IPR010402 GO:0005515
Cpe04g00363 306 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515
Cpe04g00363 306 PANTHER GATA TRANSCRIPTION FACTOR 28 1 297 IPR045280 GO:0006355
Cpe04g00363 306 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
Cpe04g00363 306 MobiDBLite consensus disorder prediction 271 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00363 Cpe-Chr4:4272010 Cpe11g00472 Cpe-Chr11:2698630 1.67E-52 dispersed
Cpe15g00382 Cpe-Chr15:5041268 Cpe04g00363 Cpe-Chr4:4272010 7.44E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49335 PF06203 CCT 1.60E-15 CL0281 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00363 - - csv:101222542 521.161