Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00363 ATGCCGGACTCCAATTTCCAAGACGTGATGTACGGTTCCGGAGTCATGAACAACGTTGCCCAGGATTTGGATAACGTTCAGACTCAAGTTGGCGATGAAGACGACAACGTTACCGGCCGGGAAGAATCCATCGACAACCCGCAGATGCGCTTTGAAGACTCCGGGGAGATGAGCGGCTCGGTCTCAGCGATGAACCGAGTCCAGGATATTGTTCCTTCGGCGTATATTTCCAGCTCTGATTACAACCCTTTGATTGGAAACGGTGGTGCCGATCAGCTCACGCTGTCATTCAGAGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTACTTTTGCTTTTAGGTGGATATGAAGTTCCTTCTGGTATTCCTGCTGTTGGAAGTGTTCCTGTCAATCAACAGGGTGCTGATGGCTTTCCTGTCAGGTCGGCGCAACCGCAAAGAGCTGCTTCATTGAGTAGGTTTCGAGAGAAGAGGAAAGAAAGGTGTTTCGGGAAGAAAATCCGTTACAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCATCTAAAGCTAGTGCAGATGAAGTGGGCTCATCTTCAGTCTTGGCTCTAACTTTGGATTCTGGTCAAGATGATGGCTTGTTGGAAACTTCATGCACACATTGTGGAGTGAGTTCAAAATCTACCCCAATGATGCGTCGAGGACCAGCAGGCCCGAGGACTCTGTGCAACGCATGTGGGCTGAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCAACCGCTGGCATTCAGGAGCCCTCTGTGAAGGAGACTGAACAGAGCGACGGTGAAGCCAACGAGTCCGATGCTGCTATAAACGTGGATGCCCTCGCTTCTAATGGTGGTAAATAG 921 49.84 MPDSNFQDVMYGSGVMNNVAQDLDNVQTQVGDEDDNVTGREESIDNPQMRFEDSGEMSGSVSAMNRVQDIVPSAYISSSDYNPLIGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEVPSGIPAVGSVPVNQQGADGFPVRSAQPQRAASLSRFREKRKERCFGKKIRYNVRKEVALRMQRKKGQFISSKASADEVGSSSVLALTLDSGQDDGLLETSCTHCGVSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSTAGIQEPSVKETEQSDGEANESDAAINVDALASNGGK 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4272010 4277634 - Cp4.1LG04g07180.1 Cpe04g00363 467925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00363 306 PANTHER GATA TRANSCRIPTION FACTOR 18 1 297 - -
Cpe04g00363 306 SMART tify_2 86 121 IPR010399 -
Cpe04g00363 306 SMART GATA_3 219 273 IPR000679 GO:0006355|GO:0043565
Cpe04g00363 306 Pfam tify domain 90 120 IPR010399 -
Cpe04g00363 306 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Cpe04g00363 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 270 - -
Cpe04g00363 306 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355|GO:0043565
Cpe04g00363 306 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355|GO:0043565
Cpe04g00363 306 Gene3D - 221 280 IPR013088 GO:0006355|GO:0008270
Cpe04g00363 306 CDD ZnF_GATA 224 274 IPR000679 GO:0006355|GO:0043565
Cpe04g00363 306 Pfam CCT motif 153 195 IPR010402 GO:0005515
Cpe04g00363 306 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515
Cpe04g00363 306 PANTHER GATA TRANSCRIPTION FACTOR 28 1 297 IPR045280 GO:0006355
Cpe04g00363 306 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
Cpe04g00363 306 MobiDBLite consensus disorder prediction 271 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00363 - - - csv:101222542 521.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00363 Cpe-Chr4:4272010 Cpe11g00472 Cpe-Chr11:2698630 1.67E-52 dispersed
Cpe15g00382 Cpe-Chr15:5041268 Cpe04g00363 Cpe-Chr4:4272010 7.44E-175 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe12g00537 CST 1 230 Tify Gene Family AT3G21175 54.8 9.9e-57 217.2
Cpe17g00409 CST 1 229 Tify Gene Family AT3G21175 55.5 3.8e-56 215.3
Cpe07g00176 . 48 255 Tify Gene Family AT4G24470 57.3 7.9e-63 238.0
Cpe11g00472 . 48 255 Tify Gene Family AT4G24470 57.3 1.4e-62 237.3
Cpe17g00409 CST 1 264 Tify Gene Family AT1G51600 59.6 9.8e-79 290.8
Cpe12g00537 CST 1 265 Tify Gene Family AT1G51600 58.6 1.4e-77 287.0
Cpe04g00363 . 86 287 Tify Gene Family AT1G51600 57.1 4.2e-53 205.7
Cpe07g00176 . 348 521 Tify Gene Family AT1G51600 56.4 1.7e-46 183.7
Cpe11g00472 . 72 250 Tify Gene Family AT1G51600 56.0 3.8e-46 182.6
Cpe07g00176 . 48 255 Tify Gene Family AT4G24470 57.3 7.9e-63 238.0
Cpe11g00472 . 48 255 Tify Gene Family AT4G24470 57.3 1.4e-62 237.3
Cpe17g00409 CST 1 264 Tify Gene Family AT1G51600 59.6 9.8e-79 290.8
Cpe12g00537 CST 1 265 Tify Gene Family AT1G51600 58.6 1.4e-77 287.0
Cpe04g00363 . 86 287 Tify Gene Family AT1G51600 57.1 4.2e-53 205.7
Cpe07g00176 . 348 521 Tify Gene Family AT1G51600 56.4 1.7e-46 183.7
Cpe11g00472 . 72 250 Tify Gene Family AT1G51600 56.0 3.8e-46 182.6
Cpe12g00537 CST 1 230 Tify Gene Family AT3G21175 54.8 9.9e-57 217.2
Cpe17g00409 CST 1 229 Tify Gene Family AT3G21175 55.5 3.8e-56 215.3
Cpe12g00176 CST 1 180 Tify Gene Family AT4G14713 52.6 4.0e-45 178.7
Cpe17g00164 CST 1 180 Tify Gene Family AT4G14713 51.6 2.6e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49335 PF06203 CCT 1.60E-15 CL0281 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g00363 Cpe_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.018273 2.031426 2.213326